1. An in vitro cell-free synthesis method of a foreign protein, which is characterized in that: the in vitro cell-free synthesis method of the foreign protein comprises the following steps:

step one, adding the component ii into the component i, and mixing;

wherein the component i is an in vitro cell-free protein synthesis system; the in vitro cell-free protein synthesis system is a water-phase synthesis system;

wherein component ii is a nucleic acid template encoding a foreign protein;

component i and component ii together provide the translation-related elements required for synthesis of the foreign protein;

secondly, carrying out incubation reaction under the assistance of a hydrophobic interface iii to synthesize the exogenous protein;

wherein the hydrophobic interface iii is in surface contact with an aqueous in vitro cell-free protein synthesis system;

optionally also comprising the step three: isolating or/and detecting the foreign protein.

2. The method for the in vitro cell-free synthesis of a foreign protein according to claim 1, wherein: the hydrophobic interface iii is an interface formed by surface contact of a synthetic system of a hydrophobic phase and the aqueous phase;

preferably, the hydrophobic interface iii is selected from the group consisting of: a solid phase hydrophobic interface, a liquid phase hydrophobic interface, or a combination thereof;

preferably, the hydrophobic interface iii is provided by a hydrophobic surface: an inner surface of the reactor, a hydrophobic outer surface of a hydrophobic built-in solid, a liquid interface of the oil phase system, or a combination thereof;

preferably, the hydrophobic phase is provided by a hydrocarbon material in the form of a paste, wax, granules, powder, liquid, or mixtures thereof;

preferably, the hydrocarbons contained in the hydrocarbon material are linear structures, branched structures, cyclic structures, or a combination thereof;

preferably, the number of carbon atoms of the hydrocarbon material is at least 6, more preferably, the number of carbon atoms of the hydrocarbon material is 6 to 44;

preferably, the hydrocarbon material is selected from aliphatic hydrocarbons;

preferably, the hydrocarbon material is selected from alkanes;

preferably, the hydrocarbon material is selected from petrolatum, mineral oil, or a combination thereof;

preferably, the number of carbon atoms of the alkane is 6-44;

more preferably, the alkane is selected from: cyclohexane, isooctane, decane, tetradecane, pentadecylcyclohexane, tetradecane, petrolatum, or a combination thereof;

the amount of alkane used to increase the amount of synthesized foreign protein was designated as Q_hc；

Said Q_hcIs selected from Y_PRT(C_hc) In curve Y_PRTGreater than Y₀The dosage interval of alkane; wherein, C_hcMeans the amount of alkane, Y_PRTMeans the amount of expression of foreign protein, Y_PRT(C_hc) The curve is the curve when the alkane dosage is used as independent variable, the foreign protein expression is used as dependent variable and other reaction parameters are determined; y is₀Means said C_hcThe corresponding foreign protein expression level is 0;

preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+50％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+60％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+70％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+80％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+90％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+95％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcThe dosage of alkane is C when the foreign protein is expressed to the maximum_max；

Wherein, the Y is_Δ＝Y_max-Y₀(ii) a Wherein, the Y is_maxFinger Y_PRT(C_hc) The highest expression level of the foreign protein in the curve.

3. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1-2, wherein the in vitro cell-free protein synthesis system comprises a cell extract;

preferably, the cell extract comprises an RNA polymerase that recognizes endogenous expression of a promoter on a nucleic acid template that initiates a gene transcription process of the foreign protein.

4. The method for the in vitro cell-free synthesis of a foreign protein according to claim 3, wherein: the in vitro cell-free protein synthesis system further comprises RNA polymerase; the source of the RNA polymerase is selected from any one of the following: a cell extract comprising an endogenously expressed RNA polymerase, an exogenous RNA polymerase, a translation product of an exogenous nucleic acid template encoding an RNA polymerase, or a combination thereof;

preferably, the RNA polymerase is T7 RNA polymerase.

5. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 3 to 4, wherein: the in vitro cell-free protein synthesis system further comprises a DNA polymerase; the source of the DNA polymerase is selected from any one of the following: a cell extract comprising an endogenously expressed DNA polymerase, an exogenous DNA polymerase, a translation product of an exogenous nucleic acid template encoding a DNA polymerase, or a combination thereof;

preferably, the DNA polymerase is phi29 DNA polymerase.

6. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 3 to 5, wherein: the cell extract contains endogenously expressed RNA polymerase;

preferably, the method is realized by modifying the endogenous strains of the kluyveromyces lactis and then preparing the cell extract, wherein the modification mode is selected from the following steps: inserting the coding sequence of RNA polymerase into the cell episome plasmid, or integrating the coding gene of RNA polymerase into the cell genome, or adopting the combination mode of the two modes;

preferably, the endogenously expressed RNA polymerase is endogenously expressed T7 RNA polymerase.

7. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 3 to 6, wherein: the in vitro cell-free protein synthesis system comprises at least one of the following components: exogenous RNA polymerase and exogenous DNA polymerase.

8. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 3 to 7, wherein: the cell extract is selected from: a prokaryotic cell extract, a eukaryotic cell extract, or a combination thereof;

preferably, the cell extract is selected from any one of the following sources: escherichia coli, yeast cells, mammalian cells, plant cells, insect cells, or a combination thereof;

more preferably, the yeast cell is selected from kluyveromyces, saccharomyces cerevisiae, pichia pastoris, or a combination thereof;

further preferably, the kluyveromyces is selected from any one of the following: kluyveromyces lactis, Kluyveromyces marxianus, Kluyveromyces polybuvinsis, Kluyveromyces hainanensis, Kluyveromyces wakii, Kluyveromyces fragilis, Kluyveromyces hubeiensis, Kluyveromyces polyspora, Kluyveromyces siamensis, Kluyveromyces salosporalis, or a combination thereof;

preferably, the source of the cell extract is selected from: any one of escherichia coli, kluyveromyces lactis, wheat germ cells, spodoptera frugiperda cells, leishmania cells, rabbit reticulocytes, chinese hamster ovary cells, african green monkey kidney COS cells, african green monkey kidney VERO cells, baby hamster kidney cells, human Hela cells, human hybridoma cells, human fibrosarcoma HT1080 cells, or any combination of the foregoing.

9. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 8, wherein the nucleic acid template encoding the foreign protein comprises a promoter element recognized by component i;

preferably, the nucleic acid template encoding the foreign protein comprises a foreign protein translation system, a resistance gene translation system, a Lac repressor translation system; the translation systems respectively comprise corresponding promoters;

preferably, the nucleic acid template encoding the foreign protein further contains a gene controlling the copy number of the plasmid;

preferably, the nucleic acid template encoding the foreign protein further comprises a transcription enhancing element or/and a translation enhancing element.

10. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 9, wherein the nucleic acid template encoding the foreign protein comprises a promoter element recognized by component i;

the nucleic acid template for encoding the foreign protein contains a T7 promoter, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the nucleic acid template encoding the foreign protein comprises a T7 promoter, and the in vitro cell-free protein synthesis system comprises a cell extract from which endogenously expressed T7 RNA polymerase is provided.

11. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 10, wherein: the in vitro cell-free protein synthesis system further comprises an energy system;

preferably, the energy system is selected from any one of: a sugar and phosphate energy system, a sugar and creatine phosphate energy system, a creatine phosphate and creatine phosphate enzyme system, a creatine phosphate and creatine phosphate kinase system, a monosaccharide and glycolytic intermediate thereof, a glycogen and glycolytic intermediate thereof, or a combination thereof.

12. A method for cell-free in vitro synthesis of a foreign protein according to any one of claims 1 to 11, characterized in that: the in vitro cell-free protein synthesis system further comprises a substrate for RNA synthesis and/or a substrate for protein synthesis;

preferably, the substrate of the synthetic RNA is a mixture of nucleotides, more preferably selected from: a nucleoside monophosphate, nucleoside triphosphate, or a combination thereof;

preferably, the substrate of the synthetic protein is an amino acid mixture at least comprising the amino acid mixture required by the process of synthesizing the foreign protein; more preferably, the amino acid mixture is a mixture of natural amino acids;

the in vitro cell-free protein synthesis system further optionally comprises a substrate for synthesizing DNA; the substrate for synthesizing DNA is preferably a mixture of deoxynucleotides, more preferably a mixture of deoxynucleoside triphosphates.

13. A method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 12, characterized in that: the in vitro cell-free protein synthesis system further comprises at least one of the following components: crowding agent, magnesium ion, potassium ion, antioxidant or reducing agent, trehalose, reaction promoter, buffer agent, aqueous solvent;

the crowding agent is preferably polyethylene glycol, polyvinyl alcohol, polypropylene ethylene, dextran, sucrose polymer, polyethylene (vinyl pyrrolidone), albumin, or a combination thereof;

the magnesium ions are preferably derived from: magnesium aspartate, magnesium acetate, magnesium glutamate, magnesium chloride, magnesium phosphate, magnesium sulfate, magnesium citrate, magnesium hydrogen phosphate, magnesium iodide, magnesium lactate, magnesium nitrate, magnesium oxalate, or a combination thereof;

the potassium ions are preferably derived from: potassium acetate, potassium glutamate, potassium chloride, potassium phosphate, potassium sulfate, potassium citrate, potassium hydrogen phosphate, potassium iodide, potassium lactate, potassium nitrate, potassium oxalate, or a combination thereof;

the antioxidant or reducing agent is preferably dithiothreitol, 2-mercaptoethanesulfonic acid, 2-mercaptoethanol, reduced glutathione, tricarboxymethylphosphonic acid, 3-mercapto-1, 2-propanediol, or a combination thereof;

the buffer is preferably selected from any one of: Tris-HCl, Tris base, HEPES, or a combination thereof;

the aqueous solvent is preferably a buffer.

14. The method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 13, wherein the foreign protein is selected from any one of the following proteins, fusion proteins in any combination, and mixtures in any combination: luciferase, green fluorescent protein, enhanced green fluorescent protein, yellow fluorescent protein, aminoacyl tRNA synthetase, glyceraldehyde-3-phosphate dehydrogenase, catalase, actin, a variable region of an antibody, alpha-amylase, enteromycin A, hepatitis C virus E2 glycoprotein, insulin precursor, interferon alpha A, interleukin-1 beta, lysozyme, serum albumin, single chain antibody segments, transthyretin, tyrosinase, xylanase, Escherichia coli beta-galactosidase, human lysine-tRNA synthetase, human leucine-tRNA synthetase, Arabidopsis glyceraldehyde 3-phosphate dehydrogenase, murine catalase, a partial domain of any of the foregoing, a subunit or fragment of any of the foregoing, a variant of any of the foregoing;

preferably, the variant is a mutant.

15. A method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 14, characterized in that: the in vitro cell-free protein synthesis system can react with a DNA template or an mRNA template for encoding the exogenous protein to synthesize the exogenous protein.

16. An in vitro protein synthesis kit, comprising:

(i) an in vitro cell-free protein synthesis system in the method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 15;

the components of the in vitro cell-free protein synthesis system are placed in one or more containers in the form of dry powder, liquid, emulsion, suspension, or a combination thereof;

(ii) optionally including a nucleic acid template encoding a foreign protein;

(iii) optionally a reaction vessel;

(iv) a hydrophobic phase: the hydrophobic interface can be constructed by surface contact with the in vitro cell-free protein synthesis system of the water phase;

the hydrophobic interface is selected from the hydrophobic interfaces of any of claims 1-15;

(v) a label or instructions;

(iii) said (i) and (ii) together provide the translation-related elements required for synthesis of the foreign protein;

preferably, the nucleic acid template encoding the foreign protein contains a promoter element capable of being recognized by (i);

preferably, the nucleic acid template encoding the foreign protein contains a T7 promoter, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the nucleic acid template encoding the foreign protein comprises a T7 promoter, and the in vitro cell-free protein synthesis system comprises a cellular extract from which endogenously expressed T7 RNA polymerase is provided;

the nucleic acid template encoding the foreign protein is a DNA template, an mRNA template, or a combination thereof.

17. Use of an alkane in a method for the in vitro cell-free synthesis of a foreign protein according to any one of claims 1 to 15, or in a kit for the in vitro protein synthesis according to claim 16, or in the in vitro protein synthesis, wherein the alkane is used for the construction of a hydrophobic interface;

preferably, the use in vitro protein synthesis comprises use in protein manufacture, or use in protein synthesis-based assays.

Background

Proteins are important molecules in cells, and are involved in performing almost all functions of cells. Protein synthesis mainly includes conventional intracellular synthesis techniques and a new generation of in vitro synthesis techniques. The conventional protein expression system refers to a molecular biological technique for expressing foreign genes by model organisms such as bacteria, fungi, plant cells, insect cells or animal cells. In vitro protein synthesis systems, also called cell-free expression systems, were produced in the 1960 s as soon as exogenous mRNA or DNA was presentThe synthesis of target protein is realized by artificially controlling and adding substances such as substrate, energy, transcription and translation related protein factors and the like required by protein synthesis for a protein synthesis template. In vitro protein synthesis systems generally refer to the rapid and efficient translation of foreign proteins by adding nucleic acid templates (mRNA templates or DNA templates), RNA polymerases, amino acids, ATP, etc. to lysates/extracts of bacteria, fungi, plant cells, insect cells, or animal cells. The in vitro protein synthesis system is a relatively fast, time-saving and convenient protein expression mode without plasmid construction, transformation, cell culture, cell collection and disruption steps, and is an important tool in the protein field (Garcia RA, Riley MR.applied biochemistry and biotechnology Humana Press, 1981, 263-264; -Fromm HJ, Hargreve M.essentials of biochemistry.2012;. CN 109988801A; Assenberg R, Wan PT, Geisse S, Mayr LM.Advance in recombinant protein expression for use in pharmaceutical research [ J].Current Opinion in Structural Biology.2013,23(3):393-402”；―Anne Zemella,Lena Thoring,Christian Hoffmeister,and StefanKubick.Cell-free protein synthesis:pros and cons of prokaryotic and eukaryotic systems[J]Chembiochem.2015,16:2420-2431 "). In vitro protein synthesis systems may also express proteins that are toxic to cells or that contain unnatural amino acids (e.g._DAmino acids) capable of synthesizing a plurality of proteins simultaneously in parallel, which facilitates the development of high-throughput drug screening and proteomics research (Spirin AS, Swartz JR. Chapter 1.Cell-Free Protein Synthesis Systems: Historical Landmarks, Classification, and General methods. Wiley-VCH Verlag GmbH&KGaA,2008: 1-34.). The protein product produced by the in vitro synthesis system can be widely applied to various fields such as medicine, food, nutriment, dietary supplement, cosmetics and the like, including but not limited to Proteinn of applicant^TMProlondon, Prolondon^TMGeneral, general^TMAnd the like.

The protein synthesis ability is one of the key indexes for determining whether an in vitro protein synthesis system can realize industrialization, and mainly comprises protein synthesis efficiency and protein synthesis amount (protein expression amount). In order to increase the protein synthesis amount, cell extracts, energy systems, genetic templates (nucleic acid templates), reactors, operation modes and other aspects are modified frequently (a key technology and industrial application exploration [ D ] of the cell-free system for efficiently synthesizing complex membrane proteins [ 2014 ]. Wherein, regarding the modification of the reactor, such as the continuous exchange type cell-free reaction developed by Kim et al (Biotechnol. prog.,1996,12(5): 645-; the reaction zone is responsible for transcribing and reacting the template molecule to express the target protein molecule; the supplementary area is responsible for supplementing consumed energy and substrates; the energy and substrate micromolecules of the complementary region can enter the reaction region through the semipermeable membrane (maintaining the reaction to be carried out), micromolecule by-products such as inorganic phosphorus and the like in the reaction region can also diffuse to the complementary region through the semipermeable membrane (reducing the inhibition effect), and the expressed target protein serving as a monomolecular substance cannot diffuse to the complementary region through the semipermeable membrane; the duration of the cell-free reaction extends from tens of minutes to even minutes to over twenty hours. Sawasaki et al also separated the reaction and supplemental regions by phase interface diffusion, without the need for a semi-permeable membrane (FEBS Lett.,2002,514(1): 102-. Biyani et al developed a solid phase cell-free reaction system that promoted an increase in local substrate concentration and increased template stability (Nucleic Acids Res.,2006,34: e 140). Park et al also used DNA hydrogels for in vitro protein synthesis, significantly improving reaction efficiency (nat. mater.,2009,8: 432-. The above-mentioned methods of reactor modification generally require the use of specially designed or specially prepared reaction equipment (selective semipermeable membranes, hydrogels, solid phase systems, etc.), or are costly, or complicated in steps, and are not suitable for large-scale production.

In view of the foregoing, there is still a need for an improved reaction vessel for efficient and low-cost in vitro cell-free protein synthesis.

Disclosure of Invention

Aiming at the technical problems, the invention discloses a simple, convenient, more efficient and higher-flux in-vitro cell-free synthesis method of exogenous protein, which can realize the obvious improvement of protein synthesis capacity by providing a hydrophobic interface and utilizing the hydrophobic interface in surface contact with an in-vitro cell-free protein synthesis system of a water phase.

The first aspect of the present invention provides a method for in vitro cell-free synthesis of a foreign protein, comprising:

step one, adding the component ii into the component i, and mixing;

wherein the component i is an in vitro cell-free protein synthesis system; the in vitro cell-free protein synthesis system is a water-phase system, which is called as a water-phase synthesis system, a water-phase synthesis system or a synthesis system for short;

wherein component ii is a nucleic acid template encoding a foreign protein;

component i and component ii together provide the translation-related elements required for synthesis of the foreign protein;

secondly, carrying out incubation reaction under the assistance of a hydrophobic interface iii to synthesize the exogenous protein;

wherein the hydrophobic interface iii is in surface contact with an aqueous in vitro cell-free protein synthesis system.

Optionally also comprising the step three: isolating or/and detecting the foreign protein.

The hydrophobic interface is formed by surface contact of a hydrophobic phase and the aqueous phase synthesis system.

A hydrophobic phase: in the hydrophobic phase of the present invention, the surface or interface in surface contact with the aqueous synthesis system is hydrophobic. With respect to the substance or device constituting the hydrophobic phase, the hydrophilicity and hydrophobicity of the portion thereof which is not in contact with the aqueous synthesis system are not particularly limited.

Depending on the physical state of the hydrophobic phase, the hydrophobic interface may be selected from: a solid phase hydrophobic interface, a liquid phase hydrophobic interface, or a combination thereof. When the hydrophobic phase is a liquid phase, it is preferred that the entirety of the liquid phase (including both the inner and outer surfaces/interfaces) is hydrophobic.

Preferably, the hydrophobic interface is provided by a hydrophobic surface: an interior reactor surface, a hydrophobic exterior surface of a hydrophobic built-in solid, a liquid interface of an oil phase system, or a combination thereof. The reactor internal surface, such as the internal surface of the sidewall, the internal surface of the bottom of the reactor. The hydrophobic built-in solid refers to a solid with hydrophobic outer surface, the position of the solid is not particularly limited, and the solid can be deposited below an aqueous phase synthesis system, can be suspended in the aqueous phase synthesis system and can also float above the aqueous phase synthesis system; preferably, the hydrophobic built-in solids are deposited below the aqueous synthesis system or float above the aqueous synthesis system.

Preferably, the hydrophobic phase is provided by a hydrocarbon material, the main component being a hydrocarbon; the hydrocarbon material is in the form of a paste (semi-solid), a solid (e.g., wax, granules, powder, etc.), a liquid, or a mixture thereof.

Preferably, the hydrocarbons contained in the hydrocarbon material are linear structures, branched structures, cyclic structures, or combinations thereof.

Preferably, the number of carbon atoms of the hydrocarbon material is at least 6, and more preferably, the number of carbon atoms of the hydrocarbon material is 6 to 44.

Preferably, the hydrocarbon material is selected from aliphatic hydrocarbons.

Preferably, the hydrocarbon material is selected from alkanes.

Preferably, the alkane is linear, branched, cyclic, or a combination thereof.

Preferably, the hydrocarbon material is selected from petrolatum, mineral oil, or a combination thereof.

Preferably, the alkane has at least 6 carbon atoms, and more preferably, the alkane has 6 to 44 carbon atoms. More preferably, the alkane is selected from: cyclohexane, isooctane, decane, tetradecane, pentadecylcyclohexane, tetradecane, petrolatum, or a combination thereof.

Preferably, the hydrophobic phase is provided by an alkane, which is in the form of a paste, a solid (e.g., waxy, granular, powder, etc.), a liquid, or a mixture thereof. More preferably, the alkane is selected from: cyclohexane, isooctane, decane, tetradecane, pentadecylcyclohexane, tetradecane, petrolatum, or a combination thereof.

The alkane dosage capable of increasing the synthesis amount of the foreign protein is selected from Y_PRT(C_hc) The expression quantity of the foreign protein in the curve is more than Y₀Interval of alkane dosage. The optional dosage intervals may be continuous or discontinuous.

In the present invention,

Q_hcthe alkane dosage capable of improving the synthesis amount of the foreign protein is covered by the invention.

C_hcAnd refers to the amount of alkane used.

Y_PRTThe expression level of the foreign protein;

Y_PRT(C_hc) The curve refers to the curve when the alkane dosage is used as independent variable, the foreign protein expression is used as dependent variable, and other reaction parameters are determined, and is also marked as Y in the invention_PRT～C_hcCurve line. The "other reaction parameters" include, but are not limited to: other system components, addition mode of reaction raw materials, reaction temperature program, reaction time length, properties of a reaction vessel, volume of the reaction system and the like. One component i system may correspond to a plurality of Y_PRT～C_hcCurve line. One component i system can be reacted under different reaction temperature programs and also for different time lengths, so that several different Y's can be generated_PRT～C_hcCurve line.

Y_maxFinger Y_PRT(C_hc) The highest expression level of the foreign protein in the curve.

C_maxFinger Y_PRT(C_hc) The alkane dosage when the foreign protein has the highest expression level in the curve.

Y_minFinger Y_PRT(C_hc) In the concentration curve, Y_PRT>Y₀The lowest expression level of the foreign protein in the interval of (3).

Y₀Means that C is_hcThe expression level of the foreign protein is 0.

Y_ΔIs Y_maxAnd Y₀Difference of (a), in value, Y_Δ＝Y_max-Y₀。

Preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+50％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+60％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+70％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+80％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+90％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+95％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcThe dosage of alkane is C when the foreign protein is expressed to the maximum_max。

The components of the in vitro cell-free protein synthesis system preferably comprise cell extracts.

Preferably, the in vitro cell-free protein synthesis system comprises a system component capable of recognizing a promoter element on a nucleic acid template such that the in vitro cell-free protein synthesis system is capable of recognizing the promoter element of a nucleic acid template encoding a foreign protein, e.g., the in vitro cell-free protein synthesis system comprises an RNA polymerase corresponding to the promoter element.

The components of the system (e.g., the corresponding RNA polymerase) that recognize the promoter element on the nucleic acid template may be provided by the cell extract, by other exogenous components, or by a combination of two or more of these.

Preferably, the gene transcription process of the foreign protein is initiated by a promoter on the nucleic acid template, and the cell extract comprises an RNA polymerase recognizing endogenous expression of the promoter on the nucleic acid template.

Preferably, the in vitro cell-free protein synthesis system further comprises an RNA polymerase. Sources of the RNA polymerase include, but are not limited to: a cell extract comprising an endogenously expressed RNA polymerase, an exogenous RNA polymerase, a translation product of an exogenous nucleic acid template encoding an RNA polymerase, or a combination thereof. In each of the above embodiments, it is preferable that the RNA polymerase is T7 RNA polymerase. The exogenous nucleic acid template for coding RNA polymerase can be translated into RNA polymerase through the in vitro protein synthesis reaction of the system. In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises a DNA polymerase. Sources of the DNA polymerase include, but are not limited to: a cell extract comprising an endogenously expressed DNA polymerase, an exogenous DNA polymerase, a translation product of an exogenous nucleic acid template encoding a DNA polymerase, or a combination thereof. In each of the above embodiments, the DNA polymerase is preferably phi29 DNA polymerase independently. The exogenous nucleic acid template for coding the DNA polymerase can be translated into the DNA polymerase through the in vitro protein synthesis reaction of the system. The RNA polymerase and the DNA polymerase, independently of each other, may be added directly by exogenous means or provided as reaction products or intermediates (e.g., addition of an exogenous nucleic acid template encoding the RNA polymerase or/and encoding the DNA polymerase).

In one preferred embodiment, the cell extract contains an endogenously expressed RNA polymerase. More preferably, the cell extract contains endogenously expressed T7 RNA polymerase.

In one preferred embodiment, the cell extract contains an endogenously expressed RNA polymerase. More preferably, the cell extract is prepared by endogenous strain engineering of the source cell, including but not limited to the following endogenous strain engineering: the coding sequence of RNA polymerase is inserted into an episomal plasmid in the cell, or the gene encoding RNA polymerase is integrated into the genome of the cell, or a combination of both. It should be noted that, in the case of the modification of the above-mentioned endogenous strain, it is permissible to insert, in addition to the coding sequence/coding gene, other nucleotide sequences such as a non-coding sequence, an enhancer sequence, a kozak sequence, a leader sequence, a signal peptide sequence, a tag sequence, a codon sequence, and the like. The modified strain can endogenously express RNA polymerase by modifying the endogenous strain. The RNA polymerase is preferably T7 RNA polymerase.

In one preferred embodiment, the in vitro cell-free protein synthesis system comprises exogenously added T7 RNA polymerase.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises at least one of the following components: exogenous RNA polymerase and exogenous DNA polymerase.

The cell extract is selected from: a prokaryotic cell extract, a eukaryotic cell extract, or a combination thereof.

In a preferred embodiment, the cell extract is selected from any one of the following sources: prokaryotic cells, yeast cells, mammalian cells, plant cells, insect cells, or combinations thereof. The prokaryotic cell is preferably E.coli.

The yeast cell is preferably selected from Kluyveromyces, Saccharomyces cerevisiae, Pichia pastoris, or a combination thereof.

The Kluyveromyces is further preferably Kluyveromyces lactis, Kluyveromyces marxianus, Kluyveromyces polybuhitensis, Kluyveromyces hainanensis, Kluyveromyces williamsii, Kluyveromyces fragilis, Kluyveromyces hubeiensis, Kluyveromyces polyspora, Kluyveromyces siamensis, Kluyveromyces lactis, or a combination thereof.

In a preferred embodiment, the cell extract is selected from any one of the following sources: coli, kluyveromyces lactis, wheat germ cells, Spodoptera frugiperda cells (Spodoptera frugiperda cells, an insect cell), Leishmania tarentolae cells (Leishmania tarentolae cells), rabbit reticulocyte, chinese hamster ovary cells (CHO cells), african green monkey kidney COS cells, african green monkey kidney VERO cells, baby hamster kidney cells (BHK cells), human Hela cells, human Hybridoma cells (human Hybridoma cells), human fibrosarcoma HT1080 cells, or a combination thereof.

Preferably, the nucleic acid template encoding the foreign protein contains a promoter element capable of being recognized by component i; the system components refer to components of an aqueous in vitro cell-free protein synthesis system.

Preferably, the nucleic acid template encoding the foreign protein contains a T7 promoter, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase;

preferably, the nucleic acid template encoding the foreign protein comprises a T7 promoter, and the in vitro cell-free protein synthesis system comprises a cell extract from which endogenously expressed T7 RNA polymerase is provided.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises an energy system; the energy system is preferably selected from: a sugar (e.g., a monosaccharide, a disaccharide, an oligosaccharide, a polysaccharide) and phosphate energy system, a sugar and phosphocreatine energy system, a phosphocreatine and phosphocreatine enzyme system, a phosphocreatine and phosphocreatine kinase system, a glycolytic pathway and its intermediate energy system (e.g., a monosaccharide and its glycolytic intermediate energy system, a glycogen and its glycolytic intermediate), or a combination thereof.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises a substrate for the synthesis of the protein; the substrate of the synthetic protein is preferably a mixture of amino acids, including at least the mixture of amino acids required for the synthesis of the foreign protein. Preferably, the amino acid mixture is a mixture of natural amino acids.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises a substrate for RNA synthesis; the substrate of the synthetic RNA is preferably a mixture of nucleotides selected from: nucleoside monophosphates, nucleoside triphosphates, or combinations thereof.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises a substrate for synthesizing DNA; the substrate for synthesizing DNA is preferably a mixture of deoxynucleotides, more preferably a mixture of deoxynucleoside triphosphates.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises at least one of the following components: crowding agent, magnesium ion, potassium ion, antioxidant or reducing agent, trehalose, reaction promoter, buffer agent, aqueous solvent;

the crowding agent is preferably polyethylene glycol, polyvinyl alcohol, polypropylene ethylene, dextran, sucrose polymers (including Ficoll sucrose polymers, e.g., Ficoll sucrose polymers)Reagents, a non-ionic synthetic sucrose polymer), polyethylene (vinyl pyrrolidone), albumin, the like, or combinations thereof;

the source of magnesium ions is preferably selected from: magnesium aspartate, magnesium acetate, magnesium glutamate, magnesium chloride, magnesium phosphate, magnesium sulfate, magnesium citrate, magnesium hydrogen phosphate, magnesium iodide, magnesium lactate, magnesium nitrate, magnesium oxalate, or a combination thereof;

the source of potassium ions is preferably selected from: potassium acetate, potassium glutamate, potassium chloride, potassium phosphate, potassium sulfate, potassium citrate, potassium hydrogen phosphate, potassium iodide, potassium lactate, potassium nitrate, potassium oxalate, or a combination thereof;

the antioxidant or reducing agent is preferably dithiothreitol, 2-mercaptoethanesulfonic acid, 2-mercaptoethanol, reduced glutathione, tricarboxymethylphosphonic acid, 3-mercapto-1, 2-propanediol, or a combination thereof;

the reaction promoter is preferably alumina;

the buffer is preferably selected from: Tris-HCl, Tris base, HEPES, or a combination thereof;

the aqueous solvent is preferably a buffer.

The in vitro cell-free protein synthesis system can react with a DNA template or an mRNA template for encoding the exogenous protein to synthesize the exogenous protein.

The above-described preferred modes may be combined in any suitable manner.

In a second aspect, the present invention provides an in vitro protein synthesis kit, comprising:

(i) an in vitro cell-free protein synthesis system according to the in vitro cell-free synthesis method for a foreign protein of the first aspect; the components of the in vitro cell-free protein synthesis system are placed in one or more containers in the form of dry powder, liquid, emulsion, suspension, or a combination thereof;

(ii) optionally including a nucleic acid template encoding a foreign protein;

(iii) optionally a reaction vessel;

(iv) a hydrophobic phase; may include substances or devices that create hydrophobic interfaces;

the hydrophobic phase can be in surface contact with the aqueous phase synthesis system to construct a hydrophobic interface;

the hydrophobic interface is selected from any hydrophobic interface in the in vitro cell-free synthesis method of the foreign protein provided by the first aspect;

(v) a label or instructions.

The (i) and (ii) together provide the translation-related elements required for synthesis of the foreign protein.

The in vitro protein synthesis kit can be used for carrying out in vitro protein synthesis reaction to synthesize exogenous protein.

The respective parts of the kit correspond to the respective components of the in vitro cell-free synthesis method of a foreign protein according to the first aspect.

Preferably, the nucleic acid template encoding the foreign protein contains a promoter element capable of being recognized by (i).

In one preferred embodiment, the nucleic acid template encoding the foreign protein contains a promoter element recognized by the cell extract. For example, the cell extract contains an endogenously expressed RNA polymerase which corresponds to the promoter element on the nucleic acid template.

In one preferred embodiment, the nucleic acid template encoding the foreign protein comprises a T7 promoter, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase.

In one preferred embodiment, the nucleic acid template encoding the foreign protein comprises a T7 promoter, and the cellular extract comprises endogenously expressed T7 RNA polymerase.

Preferably, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template.

In one preferred embodiment, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template, and the in vitro cell-free protein synthesis system comprises T7 RNA polymerase.

In one preferred mode, the T7 promoter is located upstream of the coding sequence of the foreign protein in the nucleic acid template, the transcription process of the foreign protein is initiated by the T7 promoter, and the in vitro cell-free protein synthesis system comprises a cell extract from which endogenously expressed T7 RNA polymerase is provided.

The nucleic acid template for encoding the exogenous protein is a DNA template, an mRNA template, or a combination thereof; the nucleic acid template encoding the foreign protein is preferably a DNA template.

In a third aspect, the invention provides the use of an alkane in a method for the in vitro cell-free synthesis of a foreign protein according to the first aspect, or in a kit for the in vitro synthesis of a protein according to the second aspect, or in the in vitro synthesis of a protein; wherein the alkane is used to build a hydrophobic interface.

Preferably, the use in vitro protein synthesis includes, but is not limited to, use in protein manufacture, or use in protein synthesis-based assays, among others.

Has the advantages that:

the external cell-free synthesis method of the exogenous protein provided by the invention provides an external cell-free protein synthesis system of a water phase and a nucleic acid template for encoding the exogenous protein, introduces a hydrophobic interface which is in surface contact with the external cell-free protein synthesis system of the water phase, and carries out incubation reaction to synthesize the exogenous protein, thereby improving the protein synthesis capacity (at least comprising protein synthesis efficiency and protein synthesis amount) of the cell-free system, and the improvement degree can reach 90%.

The hydrophobic interface utilizes the interaction of hydrophilic and hydrophobic phases, on one hand, the enrichment of hydrophobic components at the interface is promoted, the local concentration is increased, the reaction efficiency and the raw material utilization rate are improved, and the reaction efficiency and the protein synthesis amount are improved; on the other hand, for the water-insoluble protein product, the hydrophobic interface also plays a role in interface immobilization, so that the hydrophobic side of the protein product is attached to the interface through hydrophilic-hydrophobic interaction, and the hydrophilic end is dissolved in an in vitro cell-free protein synthesis system of an aqueous phase to play a role in interface solubilization.

Compared with the existing complex modification of a reactor (such as the construction of a selective semipermeable membrane with complex structure, high cost and complex replacement), the hydrophobic interface is constructed in a simple manner by adding alkane, compared with the gel crosslinking system constructed by a preceding polymerization reaction, the hydrophobic interface is simple and convenient to operate, cheap and easily available in raw materials and low in cost compared with a solid phase reaction system in a covalent fixation manner.

The in vitro protein synthesis kit further has the advantages of high efficiency and high flux.

Drawings

FIG. 1 shows a schematic structure of a plasmid DNA encoding a foreign protein mEGFP, 6384bp in total, and is designated as a plasmid D2P-mEGFP (abbreviated as pD 2P-mEGFP). The mEGFP is a mutant of enhanced green fluorescent protein. The plasmid DNA comprises the following elements: a T7 promoter (capable of being recognized by T7 RNA polymerase), a 5 ' non-coding region (5 ' -UTR), a kozak sequence (optional elements located downstream of the 5 ' non-coding region), a leader sequence (optional elements), a purification tag (optional elements), a coding sequence of a foreign protein mEGFP, a 3 ' non-coding region (3 ' -UTR), a T7 terminator, a replication initiation site (f1 ori), an AmpR promoter, an ampicillin resistance gene (AmpR gene), a high copy number replication initiation site (ori), a gene controlling plasmid copy number (rop gene), a gene coding for Lac repressor (lacI), and a LacI promoter.

FIG. 2, exemplary structure of exogenous nucleic acid template. The exogenous nucleic acid template in the figure is plasmid DNA encoding an exogenous protein.

FIG. 3, exemplary structure of exogenous nucleic acid template. The exogenous nucleic acid template in the figure is plasmid DNA encoding an exogenous protein.

FIG. 4, effect of cyclohexane on in vitro protein synthesis reaction. The cyclohexane is in liquid state, and the dosage is 0-20% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Wherein the concentration "0" corresponds to the blank (BC group). The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well cell culture plates (example S3).

FIG. 5, effect of isooctane on in vitro protein synthesis reaction. The isooctane is in liquid state, and the dosage is 0-5% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Wherein the concentration "0" corresponds to the blank (BC group). The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well cell culture plates.

FIG. 6, effect of decane on in vitro protein synthesis reaction. The decane is in a n-decane structure, the physical state is liquid, and the using amount is 0-5% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Wherein the concentration "0" corresponds to the blank (BC group). The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well cell culture plates.

FIG. 7, effect of tetradecane on in vitro protein synthesis reaction. Wherein tetradecane is a straight chain structure (n-tetradecane), the physical state is liquid, and the dosage is 0-2% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Wherein the concentration "0" corresponds to the blank (BC group). The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well cell culture plates.

FIG. 8, effect of tetradecane on in vitro protein synthesis reaction. Wherein tetradecane is a straight chain structure (n-tetradecane), the physical state is liquid, and the dosage is 2-20% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Wherein the concentration "0" corresponds to the blank (BC group). The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well cell culture plates.

FIG. 9, effect of pentadecylcyclohexane on in vitro protein synthesis reactions. Wherein, the pentadecylcyclohexane is in a liquid state, and the dosage is 0-20% (v/v). Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Where the concentration "0" corresponds to the blank control (BC group) and NC is the negative control. The alkane forms an oily hydrophobic interface above the in vitro protein synthesis system in the aqueous phase. Reactions were performed in 48-well culture plates.

FIG. 10, effect of tetratetradecane on in vitro protein synthesis reaction. Wherein the tetratetradecane is solid and the dosage is 0-500 mug/mu L. Wherein 3h and 18h respectively represent reaction times of 3h and 18 h. Where the concentration "0" corresponds to the blank control (BC group) and NC is the negative control. During in vitro protein synthesis, alkanes are present in oily layers above the aqueous synthesis system. Reactions were performed in 48-well cell culture plates.

FIG. 11, effect of petrolatum on in vitro protein synthesis reaction. Wherein the vaseline is a pasty alkane mixture, the dosage of the vaseline is 0-0.09 g/well, and the vaseline is coated on the side wall and the inner wall of the bottom of the hole to construct a hydrophobic interface; in this, the in vitro protein synthesis system was 300. mu.L in volume and the reaction was carried out in 48-well cell culture plates, example S10. Wherein, the BC group is a blank control group.

FIG. 12, effect of petrolatum on in vitro protein synthesis reaction. The in vitro protein synthesis system was performed in a volume of 300. mu.L in 48-well plates, example S11. Wherein ZS01092 is the number of modified strain for producing cell extract, the strain is modified Kluyveromyces lactis, endogenously integrates coding gene of T7 RNA polymerase, and can endogenously express T7 RNA polymerase. Wherein Vas represents that Vaseline is coated on the side wall and the bottom inner wall of the hole to construct a hydrophobic interface; AC represents the addition of activated carbon; AC + Vas indicates that both vaseline is applied and activated carbon is added; the BC group is a blank control group, and is not coated with vaseline or added with active carbon, but added with a DNA template for encoding the foreign protein; NC is a negative control group, is not coated with vaseline, is not added with active carbon, and is not added with a DNA template for encoding foreign protein. Wherein 3h, 6h and 21h respectively represent reaction times of 3h and 6h and reaction overnight (21 h).

FIG. 13, effect of petrolatum on in vitro protein synthesis reaction. The in vitro protein synthesis system was performed in a volume of 300. mu.L in 48-well plates, example S12. Wherein Vas represents that Vaseline is coated on the side wall and the bottom inner wall of the hole to construct a hydrophobic interface; AC represents the addition of activated carbon; ssDNA means that salmon sperm DNA is added to an in vitro protein synthesis system; amp indicates the addition of ampicillin to the in vitro protein synthesis system. Wherein, AC + ssDNA + Amp indicates that activated carbon, salmon sperm DNA and ampicillin are added, and the blank control group does not use vaseline; vas + AC + ssDNA + Amp, which means that Vaseline is also coated on the basis of the blank control group of AC + ssDNA + Amp to construct a hydrophobic interface; NC is a negative control group, and vaseline is not coated, and a DNA template for encoding the foreign protein is not added. Wherein 3h, 6h and 21h respectively represent reaction times of 3h and 6h and reaction overnight (21 h).

Nucleotide and/or amino acid sequence listing

SEQ ID No.1, which is the gene sequence of foreign protein mEGFP, and the length is 717 bases.

SEQ ID No.2 is the amino acid sequence of the foreign protein mEGFP, and has 239 amino acids in total.

Detailed Description

The meaning of the terms, nouns, phrases of the present invention. The meaning of this section is to be interpreted as applying to the invention in its entirety, both as follows and as above. In the present application, where a reference is made to a cited document, the definitions of related terms, nouns and phrases in the cited document are also incorporated herein, but in conflict with the definitions in the present application, the definitions in the present application shall govern. In the event that a definition in a reference conflicts with a definition in the present disclosure, the referenced component, substance, composition, material, system, formulation, species, method, apparatus, etc. that does not affect the referenced component is determined from the referenced document.

In the present invention, the aqueous phase synthesis system refers to an aqueous phase in vitro cell-free protein synthesis system.

In the present invention, "synthetic system", "aqueous synthetic system" and "aqueous synthetic system" have the same meaning and may be used interchangeably.

Interface: interface of substance phase and substance phase.

Hydrophobic interface: is an interface formed by the surface contact of a hydrophobic phase and the aqueous phase synthesis system.

A hydrophobic phase: in the hydrophobic phase of the present invention, the surface or interface in surface contact with the aqueous synthesis system is hydrophobic. The hydrophobicity of the hydrophobic phase refers to the hydrophobic relative to the aqueous synthesis system. The hydrophobicity of the hydrophobic phase refers to the hydrophobicity of its outer surface or external interface. With respect to the substance or device constituting the hydrophobic phase, the hydrophilicity and hydrophobicity of the portion thereof which is not in contact with the aqueous synthesis system are not particularly limited. The hydrophobic phase may be a phase or device of matter having an outer surface or external interface that is hydrophobic. Depending on the physical state of the hydrophobic phase, the hydrophobic interface may be selected from: a solid phase hydrophobic interface, a liquid phase hydrophobic interface, or a combination thereof. When the hydrophobic phase is a liquid phase, it is preferred that the entirety of the liquid phase (including both the inner and outer surfaces/interfaces) is hydrophobic.

In the present invention, "protein synthesis amount", "protein expression amount" and "protein expression yield" have the same meaning and are used interchangeably.

D2P, DNA-to-Protein, from DNA template to Protein product. For example, D2P technology, D2P system, D2P method, D2P kit, and the like.

IVTT, in vitro transcription translation.

RFU, Relative Fluorescence Unit value (Relative Fluorescence Unit).

eGFP: enhanced green fluorescence protein (enhanced green fluorescence protein).

mEGFP: a206K mutant of eGFP.

wt% or% (wt): are mass concentration units and all represent mass percent.

(v/v)% or% (v/v): all represent volume percent.

% (w/v): mass volume concentration units, corresponding to g/100 mL.

g/well, in grams per well.

Sucrose polymer: refers to a polymer containing at least 2 sucrose units. Including but not limited to polysucrose.

Ficoll sucrose polymer: unless otherwise specified, refer in particular toReagent, a non-ionic synthetic sucrose polymer, is a highly branched polymer copolymerized from sucrose and epichlorohydrinThe substance may be selected from commercially available products. Examples are Ficoll-400 (Polysucrose 400, CAS:26873-85-8), Ficoll-70 (Polysucrose 70, CAS: 72146-89-5). Wherein the content of the first and second substances,PM 400(Sigma Aldrich) is a highly branched polymer copolymerized from sucrose and epichlorohydrin, with an average molecular weight of 400 kg/mol; ficoll PM 70(Sigma Aldrich) has an average molecular weight of 70 kg/mol.

The hydrocarbon material, the main component of which is hydrocarbon, is produced with the preparation process, and impurities are not introduced in an additive way. Such as vaseline, mineral oil, for example.

Hydrocarbons, including only carbon and hydrogen atoms. Hydrocarbons are classified into saturated hydrocarbons and unsaturated hydrocarbons according to the degree of unsaturation. Hydrocarbons are classified into aromatic hydrocarbons and aliphatic hydrocarbons according to their aromaticity.

Aliphatic hydrocarbons, hydrocarbons containing no aromatic rings.

The alkane, i.e., the saturated hydrocarbon, may have an open chain structure or a cyclic structure. The open chain includes, but is not limited to, linear and branched; the branched chain includes but is not limited to a common branched structure with low branching degree, a comb-shaped structure and a tree-shaped structure with special structures, and a hyperbranched structure with high branching degree. The cyclic structure includes, but is not limited to, cyclic structures, and combinations of cyclic and open chain structures. Alkanes suitable for use in the present invention have at least 6 carbon atoms to form a liquid, paste, solid (e.g., waxy, granular, powder, etc.), or mixture thereof, to form a hydrophobic interface. When cyclic structures are included, the number of cyclic structures may be 1,2, or more.

Unsaturated hydrocarbons, including but not limited to alkenes, dienes, alkynes, and the like, each independently can be open-chain structures, and can also contain cyclic structures (e.g., the alkenes include but are not limited to open-chain alkenes, cyclic alkenes). The olefin comprises only one carbon-carbon double bond. The diene, including and only including two carbon-carbon double bonds, may be a conjugated diene or a non-conjugated structure.

Cyclic structure, all carbon atoms participate in the formation of a cyclic skeleton. Including but not limited to monocyclic, bicyclic, polycyclic, bridged, spiro, nested cyclic structures, and the like. The adjacent rings of the bridged ring share two carbon atoms, and the shared carbon atom is called a bridgehead carbon atom; the two bridgehead carbon atoms may be directly bonded by chemical bonds, or may be separated from other carbon atoms without direct bonding. The spiro ring, adjacent rings share one carbon atom.

The open-chain hydrocarbon contains no cyclic structure hydrocarbon, and includes straight-chain hydrocarbon and branched-chain hydrocarbon.

Straight chain hydrocarbons, open chain hydrocarbons in which all carbon atoms are located in the main chain, are connected in series to form a chain structure, such as n-hexane, n-decane, and n-tetradecane.

Branched chain hydrocarbons, open chain hydrocarbons having at least 1 carbon atom in the side chain, wherein at least one carbon atom is simultaneously bonded to at least three carbon atoms. Such as isooctane.

The cyclic hydrocarbon is a hydrocarbon having a cyclic structure, and examples thereof include cyclohexane (containing only a cyclic structure), pentadecylcyclohexane (a combination structure of a cyclic structure and an open chain structure), and the like. The cyclic hydrocarbon may be a saturated hydrocarbon or an unsaturated hydrocarbon.

The terms "expression system of the invention", "in vitro cell-free expression system" and "in vitro cell-free expression system" are used interchangeably and refer to in vitro protein expression systems of the invention, and can also be described in other ways, such as: protein in vitro synthesis system, in vitro protein synthesis system, cell-free protein synthesis system, cell-free in vitro protein synthesis system, in vitro cell-free synthesis system, CFS system (cell-free system), CFPS system (cell-free protein synthesis system), etc. Including in vitro translation systems, in vitro transcription translation systems (IVTT systems), and the like. In the present invention, the IVTT system is preferred. We also refer to the in vitro Protein synthesis system as a "Protein Factory" or "Protein Factory". The components of the in vitro protein synthesis system provided by the invention are described in an open mode.

"cell-free system" refers to a system in which protein synthesis is performed in vitro, but not by secretory expression from intact cells. It should be noted that, in the in vitro cell-free protein synthesis system of the present invention, it is also allowable to add cell components to promote the reaction, but the added cells do not mainly aim at secreting and expressing exogenous target proteins (exogenous target proteins). In addition, in the CFPS system without intact cells constructed under the guidance of the present invention, such a "evasion" manner that a small amount of intact cells is intentionally added (e.g., which provides a protein content of not more than 30 wt% compared to the protein content provided by the cell extract) is also included in the scope of the present invention.

In vitro protein synthesis reaction refers to a reaction for synthesizing a protein in an in vitro cell-free synthesis system, and at least comprises a translation process. Including but not limited to IVTT reactions (in vitro transcription translation reactions). In the present invention, IVTT reaction is preferred. Since the IVTT reaction, corresponding to the IVTT system, is a process of in vitro transcription and translation of DNA into Protein (Protein), we also refer to such in vitro Protein synthesis systems as the D2P system, the D-to-P system, the D _ to _ P system, and the DNA-to-Protein system; the corresponding in vitro Protein synthesis methods are also called D2P method, D-to-P method, D _ to _ P method, DNA-to-Protein method.

Post-translational modification: also known as post-translational processing, post-translational modification, PTM. The PTM system plays a significant role in the normal folding, activity and stability of proteins.

In the present invention, "translation-related elements" refer to functional elements related to the synthesis of a protein product from a nucleic acid template, and are not limited to functional elements required for translation; when the nucleic acid template is DNA, functional elements required in the transcription process are also included in a broad sense. The translation-related elements can be provided by cell extracts (various endogenous factors), other exogenous components of the in vitro protein synthesis system (such as exogenous RNA polymerase, accessory factors and the like), functional elements on the nucleic acid template (such as functional elements for controlling transcription/translation of exogenous proteins, a resistance gene translation system, a Lac repressor translation system, a translation system for controlling copy number of plasmids and the like), and the like. The functional elements for controlling transcription/translation of the foreign protein are exemplified by promoters, terminators, enhancers, IRES elements, kozak sequences, other elements for regulating the level of translation, signal sequences, leader sequences, functional tags (e.g., a selection marker tag, a tag for enhancing the level of translation), and the like.

Gene: including coding and non-coding regions.

The nucleotide sequence is as follows: a sequence consisting of nucleotide units.

Nucleic acid sequence: the sequence of the nucleic acid substance includes DNA sequence and RNA sequence.

A coding sequence: coding sequence, abbreviated CDS. A nucleotide sequence corresponding exactly to a codon of a protein, which sequence does not contain other sequences corresponding to the protein in between (irrespective of sequence changes during mRNA processing etc.).

The coding gene is as follows: the useful gene segments encoding the protein may be contiguous or non-contiguous. The coding gene necessarily includes a coding sequence.

Nucleic acid template: also referred to as genetic template, refers to a nucleic acid sequence that serves as a template for protein synthesis, including DNA templates and mRNA templates. In any embodiment of the invention, the nucleic acid templates may each independently be DNA templates, mRNA templates, or a combination thereof. In any embodiment of the invention, the nucleic acid templates may each independently preferably be DNA templates. In the present invention, the nucleic acid template encoding the foreign protein is preferably a DNA template, unless otherwise specified.

"nucleic acid template encoding protein X" refers to a nucleic acid template that contains the coding sequence for the protein X, on the basis of which the protein X can be synthesized by translation or by transcriptional translation, and that allows the inclusion of non-coding regions and also allows the inclusion of coding sequences for polypeptides or proteins other than the protein X. For example, a "nucleic acid template encoding RNA polymerase" includes at least the coding sequence of RNA polymerase, and further allows the inclusion of other nucleic acid sequences such as non-coding regions, fusion tags, and the like; the corresponding expression product contains at least an RNA polymerase structure, and can be an RNA polymerase molecule or a fusion protein thereof, and can also be a mixed component comprising the RNA polymerase molecule or/and the fusion protein thereof.

A reinforcing element: unless otherwise specified, the present invention refers to a sequence in the nucleic acid sequence, which functions to promote the transcription or/and translation process, between the promoter and the coding sequence of the target protein, such as omega sequence, kozak sequence, IRES sequence, and the like. Including transcription enhancing elements, translation enhancing elements.

Endogenous/endogenous: depending on the activity of the active cell metabolism. Endogenously expressed proteins are endogenously secreted by cells when cultured and can be processed to be present in the cell extracts of the invention.

Exogenous/exogenous: independent of active cellular metabolic activity. The exogenous components are added directly to the in vitro protein synthesis system, rather than by way of adding cells or cell extracts. Such as: exogenous RNA polymerase can be added to the reaction system by exogenous means by adding a precursor (e.g., an inactive precursor that can be enzymatically or otherwise activated to produce RNA polymerase), a nucleic acid template (which can be translated into a synthetic protein), a fusion protein, a pure substance, or a mixture. The following steps are repeated: exogenous DNA polymerase can also be added to the reaction system by exogenous means as described above.

Foreign proteins: the expression product of interest of the in vitro protein synthesis system of the invention is not secreted and synthesized by the host cell. Can be a protein, a fusion protein, a mixture containing a protein or a fusion protein; also broadly included are polypeptides. The product obtained after the in vitro protein synthesis reaction based on the nucleic acid template encoding the foreign protein can be a single substance or a mixture.

Exogenous RNA polymerase: has the same meaning as that of exogenous RNA polymerase.

Exogenous DNA polymerase: has the same meaning as that of an exogenous DNA polymerase.

"nucleic acid template encoding RNA polymerase (or nucleic acid template encoding DNA polymerase)" includes at least the coding sequence of RNA polymerase (or DNA polymerase), and further allows the inclusion of non-coding regions, fusion tags, and other nucleic acid sequences; accordingly, the expression product contains at least an RNA polymerase structure (or a DNA polymerase structure). Taking RNA polymerase as an example, the RNA polymerase can be an RNA polymerase molecule or a fusion protein thereof, and can also be a mixed component comprising the RNA polymerase molecule or/and the fusion protein thereof.

A peptide is a compound in which two or more amino acids are linked by peptide bonds. In the present invention, the peptide and the peptide fragment have the same meaning and may be used interchangeably.

Polypeptide, peptide composed of 10-50 amino acids.

Protein, peptide composed of more than 50 amino acids. The fusion protein is also a protein.

Derivatives of polypeptides, derivatives of proteins: any polypeptide or protein to which the present invention relates, unless otherwise specified (e.g., specifying a particular sequence), is understood to also include derivatives thereof. The derivatives of the polypeptide and the derivatives of the protein at least comprise C-terminal tags, N-terminal tags, C-terminal tags and N-terminal tags. Wherein the C-terminal is COOH-terminal and the N-terminal is NH₂-terminal, the meaning of which is understood by the person skilled in the art. The label can be a polypeptide label or a protein label. Some examples of tags include, but are not limited to, 6-histidine (6X-His, HHHHHHHH), Glu-Glu, c-myc epitopes (EQKLISEEDL),Octapeptide (DYKDDDDK), protein C (EDQVDPRLIDGK), Tag-100(EETARFQPGYRS), V5 epitope Tag (V5 epitope, GKPIPNPLLGLDST), VSV-G (YTDIEMNRLGK), Xpress (DLYDDDDK), hemagglutinin (YPYDVPDYA), beta-galactosidase (beta-galactosidase), thioredoxin (thioredoxin), histidine-site thioredoxin (His-notch thioredoxin), IgG-binding domain (IgG-binding domain), intein-chitin binding domain (intein-chitin binding domain), T7 gene 10(T7 gene 10), glutathione S-transferase (glutathione-S-transferase, GST), green fluorescent protein (GST), maltose-binding protein (maltose binding MBP), and the like.

Homology (homology), unless otherwise specified, means at least 50% homology; preferably at least 60% homology, more preferably at least 70% homology, more preferably at least 75% homology, more preferably at least 80% homology, more preferably at least 85% homology, more preferably at least 90% homology; also such as at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, 100% homology. Such as the homologous sequences of the omega sequences mentioned in the present description.

"variant," or "variant," refers to a substance that has a different structure (including, but not limited to, minor variations) but retains or substantially retains its original function or property. Such variants include, but are not limited to, nucleic acid variants, polypeptide variants, protein variants. Means for obtaining related variants include, but are not limited to, recombination, deletion or deletion, insertion, displacement, substitution, etc. of the building blocks. Such variants include, but are not limited to, modified products, genetically engineered products, fusion products, and the like. To obtain the gene modification product, the gene modification can be performed by, but not limited to, gene recombination (corresponding to the gene recombination product), gene deletion or deletion, insertion, frame shift, base substitution, and the like. Gene mutation products, also called gene mutants, belong to one type of gene modification products.

Modified product: including but not limited to chemically modified products, amino acid modifications, polypeptide modifications, protein modifications, and the like. The chemically modified product refers to a modified product obtained by chemical synthesis methods such as organic chemistry, inorganic chemistry, polymer chemistry, and the like, and examples of the chemically modified product include chemical modification methods such as ionization, salinization, desalinization, complexation, decomplexation, chelation, decomplexation, addition reaction, substitution reaction, elimination reaction, and the like, and specific examples of the chemically modified product include modification methods such as oxidation, reduction, methylation, demethylation, amination, carboxylation, vulcanization, and the like.

"mutant", mutant, as used herein, unless otherwise specified, refers to a mutant product that retains or substantially retains its original function or property, and the number of mutation sites is not particularly limited. Such mutants include, but are not limited to, gene mutants, polypeptide mutants, and protein mutants. Mutants are one type of variant. Means for obtaining relevant mutants include, but are not limited to, recombination, deletion or deletion of structural units, insertion, displacement, substitution, and the like. The structural unit of the gene is basic group, and the structural units of the polypeptide and the protein are amino acid. Types of gene mutations include, but are not limited to, gene deletions or deletions, insertions, frameshifts, base substitutions, and the like.

In the present invention, the cell extract, the cell lysate, the cell disruptant, and the cell lysate have the same meaning and can be used interchangeably, and english can adopt the descriptions of cell extract, cell lysate, and the like.

In the present invention, the energy system, and the energy supply system have equivalent meanings and can be used interchangeably. The energy regeneration system and the energy regeneration system have equivalent meanings and can be used interchangeably. The energy regeneration system is a preferred embodiment or component of the energy system.

An amino acid mixture refers to a mixture containing at least two or more amino acids.

In the present invention, the amino acid may be a natural amino acid, an unnatural amino acid, or a mixture thereof, unless otherwise specified_L-an amino acid,_DAmino acids or combinations thereof, and may also be radiolabeled amino acids, modified amino acids, and the like. The modified amino acid refers to an amino acid to which a chemical modification group is attached, and the structure thereof is not particularly limited, including but not limited to modification by amino acid side groups. The above definition of amino acid encompasses any substance of the invention that includes an amino acid unit, including but not limited to: a polypeptide and a derivative thereof, a protein and a derivative thereof, a polypeptide tag, a protein tag, a polypeptide sequence, a protein sequence, an amino acid modification, a polypeptide modification, a protein modification, a partial domain of any of the foregoing, a subunit or a fragment of any of the foregoing, and a variant of any of the foregoing (including a variant of the domain, the subunit, or the fragment of any of the foregoing). The "variant of any of the foregoing" includes, but is not limited to "a mutant of any of the foregoing. In the present invention, for compounds representing chiral types "_L-”、“_D- ", subscript form has the same meaning as non-subscript form.

Crowding agents, agents used to mimic the macromolecular environment of intracellular crowding in vitro. References "X Ge, D Luo and J xu. cell-free protein expression under macromolecular growth conditions [ J ]. PLoS One,2011,6(12): e 28707" and citations thereof, among others.

The phosphoric acid compound comprises organic matters and inorganic matters.

The phosphate refers to an inorganic phosphate unless otherwise specified.

In the present invention, the "ordinary temperature" is preferably room temperature to 37 ℃, specifically, preferably 20 ℃ to 37 ℃, and more preferably 25 ℃ to 37 ℃.

In the present invention, the preferred embodiments such as "preferred", "more preferred" and "most preferred" are not intended to limit the embodiments of the present invention, but merely to provide examples of embodiments with better technical effects.

In the description of the present invention, specific features described for "one of the preferred embodiments", "preferred example", "in a preferred embodiment", "preferably", "preferred", "more preferred", "further preferred", "most preferred", etc. preferred modes, and "one of the embodiments", "one of the modes", "an example", "a specific example", "by way of example", "as an example", "for example", "such as", etc. are included in at least one specific embodiment of the present invention. The particular features described in connection with the various modes can be combined in any suitable manner in any one or more of the particular embodiments of the invention. In the invention, the technical schemes corresponding to the preferred modes can be combined in any suitable mode; for example, an exogenous RNA polymerase and an exogenous DNA polymerase can be added simultaneously, see patent publication CN 108642076A.

In the present invention, "optionally" means either the presence or absence thereof.

In the present invention, "any combination thereof" means "equal to 1 or more than 1" in number, and means a group consisting of the following cases in range: "optionally one of them, or optionally a combination of at least two of them".

In the present invention, the description of "one or more", etc. "has the same meaning as" at least one "," any combination ", etc., and may be used interchangeably to mean" equal to 1 or greater than 1 "in number.

In the present invention, "and/or" means "either one of them or any combination thereof, and also means at least one of them. By way of example, "comprising a substrate for a synthetic RNA and/or a substrate for a synthetic protein", it is meant that the substrate for a synthetic RNA alone may be included, the substrate for a synthetic protein alone may be included, and the substrate for a synthetic RNA and the substrate for a synthetic protein may be included at the same time.

The prior art means described in the modes of "usually", "conventionally", "generally", "often", and the like, are also referred to as the content of the present invention, and if not specifically stated, they are regarded as one of the preferred modes of the present invention.

All documents cited herein, and documents cited directly or indirectly by such documents, are incorporated by reference into this application as if each were individually incorporated by reference.

It is understood that within the scope of the present invention, the above-mentioned technical features of the present invention and those specifically described below (including but not limited to the examples) can be combined with each other to constitute a new or preferred technical solution, as long as the foreign protein can be synthesized in vitro or, preferably, efficiently. Not to be reiterated herein, but to the extent of space.

The first aspect of the present invention provides a method for in vitro cell-free synthesis of a foreign protein, comprising:

step one, adding the component ii into the component i, and mixing;

wherein the component i is an in vitro cell-free protein synthesis system; the in vitro cell-free protein synthesis system is an aqueous phase system;

wherein component ii is a nucleic acid template encoding a foreign protein;

secondly, carrying out incubation reaction under the assistance of a hydrophobic interface iii to synthesize the exogenous protein;

wherein the hydrophobic interface iii is in surface contact with an aqueous in vitro cell-free protein synthesis system.

Further optionally comprising the step of isolating or/and detecting said foreign protein.

The component i and the component ii can jointly provide translation-related elements required for synthesizing the foreign protein. Preferably, the nucleic acid template encoding the foreign protein contains a promoter element capable of being recognized by component i.

By limiting the technical functions of "expressing a foreign protein", the present invention covers only combinations of technical features that can achieve the above-described functions, and combinations of technical features that cannot achieve the above-described functions are, of course, excluded from the scope of the present invention. That is, the in vitro cell-free protein synthesis system (component i system) should be a workable system in the first place, being a system capable of expressing foreign proteins.

Hydrophobic interface

The hydrophobic interface is formed by surface contact of a hydrophobic phase and the aqueous phase synthesis system.

The hydrophobic interface provides local enrichment of raw materials through hydrophilic-hydrophobic interaction and can also provide interfacial solubilization for water-insoluble protein products. In addition, the translation process from mRNA to protein is carried out in ribosomes, whose membrane surface of the Endoplasmic Reticulum (ER) has a hydrophobic structure and hydrophobic properties; the hydrophobic interface provides a ribosome-like hydrophobic structure, and the hydrophobic interface constructed by the invention is supposed to have a promoting effect on the folding of a new synthetic protein.

Depending on the physical state of the hydrophobic phase, the hydrophobic interface may be selected from: a solid phase hydrophobic interface, a liquid phase hydrophobic interface, or a combination thereof. When the hydrophobic phase is a liquid phase, it is preferred that the entirety of the liquid phase (including both the inner and outer surfaces/interfaces) is hydrophobic. Preferably, the hydrophobic interface is provided by a hydrophobic surface: an interior reactor surface, a hydrophobic exterior surface of a hydrophobic built-in solid, a liquid interface of an oil phase system, or a combination thereof. The reactor internal surface, such as the internal surface of the sidewall, the internal surface of the bottom of the reactor. The hydrophobic built-in solid refers to a solid with hydrophobic outer surface, the position of the solid is not particularly limited, and the solid can be deposited below an aqueous phase synthesis system, can be suspended in the aqueous phase synthesis system and can also float above the aqueous phase synthesis system; preferably, the hydrophobic built-in solids are deposited below the aqueous synthesis system or float above the aqueous synthesis system.

Preferably, the hydrophobic phase is provided by a hydrocarbon material. The hydrocarbon material is mainly composed of hydrocarbon, and is in the form of paste, solid (such as wax, granule, powder, etc.), liquid, or mixture thereof. The number of carbon atoms of the hydrocarbon contained in the hydrocarbon material is at least 6, and one of the preferable modes is 6 to 44. The hydrocarbon contained in the hydrocarbon material may be a saturated hydrocarbon or an unsaturated hydrocarbon. Depending on the degree of unsaturation, the hydrocarbons contained in the hydrocarbon material include, but are not limited to, alkanes, alkenes, dienes, alkynes; depending on the structure type, the hydrocarbons contained in the hydrocarbon material include, but are not limited to, open-chain hydrocarbons, cyclic hydrocarbons.

The hydrocarbon material is preferably selected from aliphatic hydrocarbons.

Preferably, the hydrocarbon material is selected from alkanes.

Preferably, the hydrophobic phase is provided by an alkane.

Preferably, the alkane is in the form of a paste, a solid (e.g., waxy, granular, powder, etc.), a liquid, or a mixture thereof.

Preferably, the alkane has at least 6 carbon atoms.

Preferably, the alkane is linear, branched, cyclic, or a combination thereof. The molecular general formula of the straight chain and branched chain structure is C_nH_2n+2The molecular formula of the cyclic structure is typically C_nH_2n(monocyclic).

Preferably, the alkane has 6 to 44 carbon atoms.

More preferably, the alkane is selected from: cyclohexane, isooctane, decane, tetradecane, pentadecylcyclohexane, tetradecane, petrolatum, or a combination thereof.

Preferably, the hydrocarbon material is selected from petrolatum, mineral oil, or a combination thereof.

The alkane dosage (Q) capable of increasing the synthesis amount of the foreign protein_hc) According to Y_PRT(C_hc) Determining the expression level of the foreign protein in the curve, selected from Y_PRT(C_hc) The expression quantity of the foreign protein in the curve is more than Y₀The interval of time of use.

Preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+50％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+60％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+70％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+80％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+90％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcSelected from foreign proteins expressed in an amount of at least Y₀+95％Y_ΔThe dosage interval of alkane;

more preferably, said Q_hcThe dosage of alkane is C when the foreign protein is expressed to the maximum_max。

In a preferred embodiment, the method for determining the alkane usage amount comprises: when the types and the contents of the system components of the in vitro cell-free protein synthesis system are determined, the alkane dosage is adjusted within a wider concentration range, and the alkane dosage C is the alkane dosage when the expression amount of the foreign protein is the highest under the specified reaction conditions (reaction temperature, reaction time and the like)_maxNamely the optimum dosage of the alkane under the technical scheme.

Said Y is_PRT(C_hc) Curve, Q_hc，C_hc，Y_PRT，Y_max，C_max，Y₀，Y_ΔThe definitions of (a) and (b) are consistent with the above.

The protection scope of the invention only covers the technical scheme corresponding to the alkane dosage capable of improving the expression quantity of the foreign protein. In the invention, for any component i system of the in vitro cell-free protein synthesis system, only at least one alkane usage value is required to be present to improve the expression level of the foreign protein, and all alkane usage values are not required to play a role in improving.

In vitro cell-free protein synthesis reaction and in vitro cell-free protein synthesis system

The in vitro protein synthesis reaction of the invention is carried out in an in vitro cell-free protein synthesis system of a water phase.

The in vitro cell-free protein synthesis system can provide various factors required by the in vitro protein synthesis process. The cell extract may be provided in an integrated form, or may be provided by separate addition.

The kind and content of each component of the in vitro cell-free protein synthesis system are not particularly limited as long as the system is constructed to be capable of reacting with a nucleic acid template encoding a foreign protein to synthesize the foreign protein, and a combination manner capable of efficiently expressing the foreign protein is preferred. Combinations that do not allow the expression of the foreign protein due to the concentration of certain components being too low or too high are, of course, excluded from the scope of the invention.

The order of addition of the components of the in vitro cell-free protein synthesis system is not particularly limited.

Preferably, the in vitro cell-free protein synthesis system comprises components of a system capable of recognizing a promoter element on a nucleic acid template, such as an RNA polymerase corresponding to the promoter element.

The components of the system capable of recognizing the promoter element on the nucleic acid template, such as the corresponding RNA polymerase, may be provided by the cell extract, may be provided by exogenous addition, or may be provided by a combination of the two.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises at least a cell extract. The cell extract is intended to provide a structure or biological factor for the transcription and translation of proteins. The selection criteria of the cell extract are as follows: can synthesize the exogenous protein through in vitro protein synthesis reaction based on a nucleic acid template for encoding the exogenous protein. The cell extract of the present invention may be derived from a wild type or a non-wild type. Non-wild-type modifications include, but are not limited to, gene modifications. The cell extract of the present invention is preferably derived from a eukaryotic cell, more preferably from a yeast cell, more preferably from a kluyveromyces lactis cell.

The components of the in vitro cell-free protein synthesis system preferably comprise cell extracts. More preferably, the cell extract contains an endogenously expressed RNA polymerase corresponding to the promoter element on the nucleic acid template. Specifically, for example, the kluyveromyces lactis cell extract contains endogenously expressed T7 RNA polymerase, which can recognize the T7 promoter on the nucleic acid template.

In a preferred embodiment, the Protein synthesis Using Recombinant Elements (PURE) system developed by Japanese scientist is used to provide various factors required for the in vitro Protein synthesis process. Reference is made to the introduction of the PURE system in the publications "Lu, Y.Advances in Cell-Free Biosynthetic technology.Current Developments in Biotechnology and Bioengineering,2019, Chapter 2, 23-45.", "Y Shimizu, A Inoue, Y Tomari, et al.cell-Free transformed with purified components [ J ]. Nature Biotechnology,2001,19(8):751 755", et al.

The process of in vitro synthesis of proteins includes at least a translation process and optionally also a transcription process.

The transcription process to convert DNA into mRNA is not isolated from RNA polymerase. The in vitro cell-free protein synthesis system preferably further comprises an RNA polymerase. The RNA polymerase may be selected from: endogenously expressed RNA polymerase (provided via cell extract), exogenously added RNA polymerase, or a combination thereof.

The endogenously expressed RNA polymerase is not added separately but is present in the cell extract.

In order to achieve the inclusion of endogenously expressed RNA polymerase in the cell extract, the coding sequence/gene for the RNA polymerase is preferably integrated into the host cell from which the cell extract is prepared, particularly preferably by: the coding sequence of RNA polymerase is inserted into an isolated plasmid in the cell, or the coding gene of RNA polymerase is integrated into the genome of the cell, or a combination of the two methods is adopted to carry out strain modification, and then a cell extract is prepared. Such means of integrating the coding sequence/gene of the RNA polymerase into the genome of the cell include, but are not limited to: insertion into the genome of the cell, replacement of portions of the genome in situ, or a combination thereof.

The exogenously added or endogenously expressed RNA polymerase is each independently preferably T7 RNA polymerase.

The in vitro cell-free protein synthesis system, preferably comprising a DNA polymerase, which may be selected from: endogenously expressed DNA polymerase (provided via cell extract), exogenously added DNA polymerase, or combinations thereof.

The in vitro cell-free protein synthesis system optionally comprises an exogenous RNA polymerase or/and a nucleic acid template encoding an RNA polymerase.

The in vitro cell-free protein synthesis system optionally comprises an exogenous DNA polymerase or/and a nucleic acid template encoding a DNA polymerase.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises an exogenous RNA polymerase and an exogenous DNA polymerase. References CN108642076A, WO2018171747a1(CN 201710176691.4).

In one preferred form, the in vitro cell-free protein synthesis system comprises an energy system.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a substrate for RNA synthesis.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a substrate for a synthetic protein.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a DNA polymerase, a substrate for synthesizing DNA.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a cell extract, an energy system, a substrate for protein synthesis, an RNA polymerase (contained in the cell extract or independently and exogenously added), and a substrate for RNA synthesis.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a cell extract, an energy system, a substrate for protein synthesis, an RNA polymerase (contained in the cell extract or separately and exogenously added), a substrate for RNA synthesis, a DNA polymerase (contained in the cell extract or separately and exogenously added), and a substrate for DNA synthesis.

In a preferred embodiment, the in vitro cell-free protein synthesis system comprises a Kluyveromyces lactis cell extract (containing endogenously expressed RNA polymerase), an energy system, a substrate for RNA synthesis, and a substrate for protein synthesis.

The in vitro cell-free protein synthesis system optionally comprises at least one of the following components: crowding agent, magnesium ion, potassium ion, antioxidant or reducing agent, trehalose, reaction promoter, buffer and aqueous solvent.

Cell extract

The cell extract should be capable of expressing the nucleic acid template encoding the foreign protein in the in vitro cell-free protein synthesis system, i.e., capable of synthesizing the foreign protein encoded thereby based on the nucleic acid template.

The cell extract is intended to provide structural factors or/and biological factors for the transcription and translation of proteins.

Cell extracts can provide many key translation-related elements required for synthesis of foreign proteins; this is the endogenous way of supply.

The cell extract is typically used to provide ribosomes, transfer RNA (tRNA), aminoacyl tRNA synthetase, initiation and elongation factors for protein synthesis, and stop release factors, and may also be used to endogenously provide other enzymatic substances such as polymerases (RNA polymerases and/or DNA polymerases) after strain engineering.

The cell extract is in principle free of intact cells, because the preparation method of the cell extract contains a step of disrupting cells (also referred to as a cell disruption treatment, a lysis step, etc.). In contrast to the traditional synthetic approach of secreting expressed proteins from intact cells, the in vitro protein synthesis system thus constructed is referred to as a cell-free system. The cell extract may also contain some other proteins, especially soluble proteins, originating from the cytoplasm of the cell.

Preferably, the cell extract contains various factors required for protein synthesis.

The related coding gene can be naturally present in the genome of the cell, or can be integrated into the genome of the cell (integrated into a chromosome), or can be inserted into an episomal plasmid of the cell. Taking RNA polymerase and DNA polymerase as examples, in one preferred embodiment, the cell extract contains endogenously expressed RNA polymerase and/or DNA polymerase.

Endogenous integration of the coding sequence or genes encoding the heterologous protein into the cell from which the cell extract is derived may allow for endogenous expression of the heterologous protein, which may include, but is not limited to: RNA polymerase, DNA polymerase, etc. Methods for endogenous integration of a coding sequence or a gene encoding a heterologous protein can be referred to methods provided in the prior art documents including, but not limited to, patent application documents CN109423496A, CN10697843A, CN2018116198190, "Molecular and Cellular Biology,1990,10(1): 353-360" and the like, and the references cited therein, and specifically, include, but are not limited to: the coding sequence may be inserted into an episomal cytoplasmic granule, the coding gene may be inserted into the genome of the cell, a portion of the gene in the genome of the cell may be replaced in situ with the coding gene, or a combination thereof.

In a preferred embodiment, the cell extract is derived from cells that endogenously incorporate a gene encoding RNA polymerase, endogenously express RNA polymerase, and are capable of in vitro cell-free protein synthesis without the addition of exogenous RNA polymerase. Implementations of the endogenous integrated RNA polymerase include, but are not limited to: inserting a gene encoding RNA polymerase into a cellular plasmid or into the genome of a cell, replacing a portion of a gene or sequence of the genome with a gene encoding RNA polymerase in situ (i.e., including a step of knocking out the original portion of the gene or sequence), knocking out the original portion of the gene and inserting a gene encoding RNA polymerase, or a combination thereof. In example S2, a gene encoding T7 RNA polymerase was integrated into the genome of a Kluyveromyces lactis cell that endogenously expresses T7 RNA polymerase, and the cell extract thus prepared contained endogenously expressed T7 RNA polymerase, without the additional addition of RNA polymerase to the in vitro cell-free protein synthesis system. In other embodiments, the cellular extract is prepared by inserting the coding sequence for RNA polymerase into an intracellular free plasmid of Kluyveromyces lactis. Refer specifically to the preparation method of CN 109423496A.

Other genetic modification methods can also be adopted to modify the source cells so as to promote the activity of the cell extract in promoting in vitro protein synthesis, such as the gene knockout methods of CN2018116083534, CN2019107298813 and CN108949801A, such as the genetic modification method of 2018112862093 and the like.

The preparation method of the cell extract can adopt the reported technical means. In brief summary, the following steps may generally be included: the cells were snap frozen with liquid nitrogen, disrupted, centrifuged and the supernatant collected to obtain the cell extract. Reference is made to documents CN106978349A, CN108535489A, CN108642076A, CN109593656A, CN109971783A and the like. The seed cells can be subjected to fermentation culture, centrifugation, culture solution removal, cell collection, and cell extract preparation.

The cell extract prepared by the method can ensure that in vitro protein synthesis reaction is normally carried out, and contains necessary components required by protein synthesis such as tRNA with amino acid transport function, aminoacyl tRNA synthetase and the like. In some embodiments, the cell extract is a yeast cell extract, prepared using a method comprising: (i) providing a source cell; (ii) washing the yeast cells to obtain washed yeast cells; (iii) performing cell breaking treatment on the washed yeast cells to obtain a yeast crude extract; and (iv) performing solid-liquid separation on the yeast crude extract, wherein the collected supernatant part is the cell extract. The yeast cell extract is preferably a Kluyveromyces lactis cell extract.

In the present invention, one of the preferable modes of the protein content of the cell extract is 20 mg/mL-100 mg/mL. Another preferred embodiment is 20mg/mL to 50 mg/mL. Another preferred embodiment is 50 mg/mL-100 mg/mL. Another preferred embodiment is a concentration of any one of 25mg/mL, 30mg/mL, 35mg/mL, 40mg/mL, 45mg/mL, 50mg/mL, 60mg/mL, 70mg/mL, 80mg/mL, 90mg/mL, or a range of concentrations between any two concentrations, inclusive. The method for determining the protein content can adopt a Coomassie brilliant blue determination method.

The concentration of the cell extract in the in vitro protein synthesis system is not particularly limited. In a preferred embodiment, the concentration of the cell extract is 20% to 80% (v/v); in another preferred embodiment, the concentration of the cell extract is 20% to 70% (v/v); in another preferred embodiment, the concentration of the cell extract is from 30% to 60% (v/v); in another preferred embodiment, the concentration of the cell extract is from 40% to 50% (v/v); in another preferred embodiment, the concentration of the cell extract is 80% (v/v); all based on the total volume of the in vitro cell-free protein synthesis system. Examples of the concentration of the cell extract also include, but are not limited to, any one of the following volume percentages, or a range between any two of the following volume percentages (the range may or may not include both of the following endpoints): 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, 100%.

The cell extract is derived from a prokaryotic cell, a eukaryotic cell, or a combination thereof.

One of the preferred modes of the cell extract of the present invention is derived from prokaryotic cells, more preferably E.coli (E.coli cells) or Bacillus.

One of the preferred embodiments of the cell extract of the present invention is derived from eukaryotic cells.

Prokaryotic cells and eukaryotic cells have fundamental differences in translation initiation and regulation mechanisms, and prokaryotic expression systems lack various post-translational protein processing mechanisms. Typically, cell-free systems of genetic E.coli cells lack the ability to perform translation or post-translational modifications that can only be performed by eukaryotic cell-free systems, rendering many eukaryotic proteins unsuitable for expression in such systems; the synthesized protein process contains incomplete new polypeptide. The cell-free protein synthesis system based on the prokaryotic system is far from the cell-free protein synthesis system based on the eukaryotic system in terms of synthesis mechanism. References include, but are not limited to, the following: "Nicole E.Gregorio, Max Z.Levine and Javin P.Oza.methods protocols.2019, 2, 24", "Edited by Alexander S.spirin and James R.Swartz.cell-free protein synthesis: methods and protocols [ M ] 2008, p.5", "Zhang Shu. The in vitro cell-free protein synthesis system of the present invention preferably employs eukaryotic cell extracts.

The cell source of the cell extract may be selected from, including but not limited to, eukaryotic cells from the group consisting of: mammalian cells (e.g., rabbit reticulocyte, HF9, Hela, CHO, K562, HEK293), plant cells (e.g., wheat germ cells, tobacco BY-2 cells), yeast cells, insect cells, nematode cells, or combinations thereof. Sources of such mammalian cells include, but are not limited to, murine, rabbit, monkey, human, and the like.

The Cell source of the Cell extract and the method for preparing the same can also be reported by reference to the existing literature, including but not limited to the literature, "Nicole E.Gregorio, Max Z.Levine and Javin P.Oza.A. User's Guide to Cell-Free Protein Synthesis [ J ]. Methods protocols.2019, 2, 24", "Y Lu.Advances in Cell-Free biochemical technology [ J ]. Current Developments in Biotechnology and Bioengineering,2019, Chapter 2, 23-45" and the Cell sources reported in the direct citations or indirect citations are all incorporated herein by reference. For example, prokaryotic sources include, but are not limited to, e.coli (e.coli); eukaryotic cell sources include, but are not limited to, Saccharomyces cerevisiae (Saccharomyces cerevisiae), Streptomyces lividans (Streptomyces lividans), wheat germ cells (steamed gem), tobacco BY-2 cells (tobaco BY-2 cells), Spodoptera frugiperda cells (sf cells), an insect cell), Trichoplusia ni cells (Trichoplusia cells), rabbit reticulocyte (rabbitreticulocyte), CHO cell (Chinese hamster ovary cell), human K562 cell, HEK293 cell, HeLa cell, mouse fibroblast (mouse fibroblast cell), Leishmania tarentolae cell (Leishmania tarania, yeast cell, single cell), and the like.

The yeast cell is preferably selected from one of the embodiments, preferably from Saccharomyces cerevisiae, Pichia pastoris, Kluyveromyces, or a combination thereof; the Kluyveromyces is further preferably Kluyveromyces lactis (K.lactis), Kluyveromyces lactis var. drosophilarium, Kluyveromyces lactis var. lactis, Kluyveromyces marxianus var. marxianus, Kluyveromyces marxianus, Kluyveromyces lactis, Kluyveromyces marxianus (Kluyveromyces dozshanii), Kluyveromyces lactis (Kluyveromyces lactis), Kluyveromyces marxianus (Kluyveromyces marxianus), Kluyveromyces marxianus (siamenses siamensius), Kluyveromyces lactis (Kluyveromyces), Kluyveromyces lactis Kluyveromyces, Kluyveromyces (Kluyveromyces), Kluyveromyces lactis, Kluyveromyces, or the like; references include, but are not limited to, the following: EP1197560A1, "Marc-Andre Lachance, the Yeast (Fifth edition), Chapter 35, Kluyveromyces van der Walt (1971) 2011, Pages 471-.

Kluyveromyces (Kluyveromyces) is a species of ascosporogenous yeast, and among them, Kluyveromyces marxianus (Kluyveromyces marxianus) and Kluyveromyces lactis (Kluyveromyces lactis) are industrially widely used yeasts. In comparison with other yeasts, kluyveromyces lactis has many advantages such as superior secretion ability, better large-scale fermentation characteristics, a level of food safety, and also the ability of post-translational modification of proteins. The genome of the wild-type strain of Kluyveromyces lactis does not contain a gene encoding T7 RNA polymerase.

In a preferred embodiment, the source of the cellular extract is kluyveromyces lactis, and any one or a combination of the following gene sequences is endogenously integrated: a gene encoding RNA polymerase and a gene encoding DNA polymerase. Preferably, the endogenous integration is into the cellular plasmid or into the cellular genome.

In a preferred embodiment, the source of the cellular extract is kluyveromyces lactis, and any one or a combination of the following is endogenously integrated: a gene encoding T7 RNA polymerase and a gene encoding phi29 DNA polymerase. Preferably, the endogenous integration is into the cellular plasmid or into the cellular genome.

In a preferred embodiment of the cell extract according to the present invention, the cell extract may be selected from any of the following sources: coli, yeast cells, mammalian cells, plant cells, insect cells, or a combination thereof. More preferably, the yeast cell is selected from the group consisting of Kluyveromyces, Saccharomyces cerevisiae, Pichia pastoris, or combinations thereof; the Kluyveromyces is further preferably Kluyveromyces lactis var. drosophilarium, Kluyveromyces lactis var. lactis, Kluyveromyces marxianus var. lactis, Kluyveromyces marxianus, Kluyveromyces marxianus, Kluyveromyces marxianus vanduli, Kluyveromyces polybubali, Kluyveromyces amabilis, Kluyveromyces thermotolerans, Kluyveromyces fragilis, Kluyveromyces hupehensis, Kluyveromyces polyspora, Kluyveromyces siae, Kluyveromyces lactis, or a combination thereof.

In another preferred embodiment, the cell extract is a yeast cell extract, more preferably a kluyveromyces marxianus cell extract or a kluyveromyces lactis cell extract.

In another preferred embodiment, the cell extract may be selected from any one of the following sources: coli, kluyveromyces lactis, wheat germ cells, Spodoptera frugiperda cells (sf cells, an insect cell), leishmania tarentolae cells, rabbit reticulocyte, chinese hamster ovary cells (CHO cells), african green monkey kidney COS cells, african green monkey kidney VERO cells, baby hamster kidney cells (BHK cells), human Hela cells, human Hybridoma cells (human Hybridoma cells), human fibrosarcoma HT1080 cells, or a combination thereof.

Exogenous RNA polymerase and exogenous DNA polymerase

When the genome of the cell from which the cell extract is derived does not contain the gene encoding RNA polymerase, nor does it endogenously integrate the coding sequence/gene encoding RNA polymerase, it is usually necessary to add an additional exogenous RNA polymerase to facilitate the reaction. For example, when a cell extract of a wild-type Kluyveromyces lactis is used.

The addition of exogenous RNA polymerase to an in vitro protein synthesis system is a conventional technical approach. In vitro protein synthesis systems with exogenous RNA polymerase added, reported in the prior art, are all included in the invention as an alternative mode of the component i system of the invention. For example, the in vitro protein synthesis system of Kluyveromyces lactis with exogenous RNA polymerase (such as T7 RNA polymerase) added in CN108535489A is included in the present invention as an alternative to the component i system.

The in vitro cell-free protein synthesis system can also comprise at least one of the following components to optimize the reaction system: exogenous RNA polymerase, a nucleic acid template for coding the exogenous RNA polymerase, exogenous DNA polymerase and a nucleic acid template for coding the exogenous DNA polymerase.

The exogenous RNA polymerase may be added directly, an exogenous nucleic acid template encoding RNA polymerase may be added, or a combination thereof. The coding sequence of RNA polymerase may be constructed together with the nucleic acid template encoding the foreign protein or separately from the foreign nucleic acid template.

Similarly, the DNA polymerase may be added directly, or an exogenous nucleic acid template containing its coding sequence may be added, or a combination thereof. Can be a nucleic acid template for encoding the exogenous protein or can be an independent exogenous nucleic acid template.

When the nucleic acid template for encoding the foreign protein is a DNA template, the amplification process of the DNA can be included, or the amplification process of the DNA can not be included; if the in vitro protein synthesis reaction also includes a DNA amplification process, the system needs to contain endogenously expressed or/and exogenously added DNA polymerase, for example, exogenous phi29 DNA polymerase is added into CN 108642076A. In the embodiment S1-S2 of the present invention, after the DNA encoding the foreign protein mmefp is amplified in vitro, the amplification product is added to the reaction system as a foreign DNA template, and the in vitro protein synthesis reaction further requires a DNA amplification process. When a DNA polymerase is added to the system, that is, when a DNA amplification process is involved, a substrate for synthesizing DNA is also added.

The DNA polymerase may be a polymerase derived from a eukaryote or a prokaryote. Examples of eukaryotic polymerases are any one or any combination of the following: pol- α, pol- β, pol- δ, pol- ε, and the like, fragments of any of the foregoing, and variants of any of the foregoing (including variants of any of the foregoing fragments). Prokaryotic polymerases are exemplified by any one or any combination of the following: coli (e.coli) DNA polymerase I (e.g., Klenow fragment), e.coli DNA polymerase II, e.coli DNA polymerase III, e.coli DNA polymerase IV, e.coli DNA polymerase V, bacteriophage T4 DNA polymerase, Bacillus stearothermophilus (Bacillus stearothermophilus) polymerase I, Phi29 DNA polymerase, T7 DNA polymerase, Bacillus subtilis Pol I, Staphylococcus aureus (Staphylococcus aureus) Pol I, etc., a partial domain of any of the foregoing, a subunit or fragment of any of the foregoing, a variant of any of the foregoing (including a variant of any of the foregoing domains, subunits, fragments). Such variants include, but are not limited to, mutants.

The polymerase (exogenous RNA polymerase, exogenous DNA polymerase) is preferably a polymerase that can be amplified at room temperature, preferably room temperature to 37 ℃, specifically, preferably 20 ℃ to 37 ℃, and more preferably 25 ℃ to 37 ℃. The polymerase capable of performing amplification at room temperature can be selected according to the exogenous nucleic acid template, and the room temperature amplification polymerases that can be used in vitro cell-free systems are all included in the scope of the present invention as reference, including but not limited to phi29 DNA polymerase, T4 DNA polymerase, T7 DNA polymerase, exo-klenow DNA polymerase, Bsu DNA polymerase, Pol III DNA polymerase, T7 RNA polymerase, T3 RNA polymerase, T4 RNA polymerase, T5 RNA polymerase, etc., partial domains of any of the foregoing polymerases, subunits or fragments of any of the foregoing, variants of any of the foregoing, and any combination of any of the foregoing polymerases and partial domains, subunits, fragments, variants (including but not limited to mutants) thereof. The present invention may also employ other DNA polymerases such as Taq DNA polymerase, Pfu DNA polymerase, Pol I DNA polymerase, Pol II DNA polymerase, and the like.

In some preferred embodiments, the DNA polymerase has a strand displacement function.

In some preferred embodiments, the DNA polymerase lacks 3 '-5' exonuclease activity.

The amplification techniques, particularly the normal temperature amplification method, which can be used in the present invention are not particularly limited, and the normal temperature amplification techniques which can be used in vitro cell-free systems are all included in the scope of the present invention by reference.

Energy system/energy regeneration system

An energy system/energy regeneration system is used to provide the energy required for the protein synthesis process.

Energy systems/energy regeneration systems reported for cell-free in vitro protein synthesis systems can provide energy for the in vitro protein synthesis system of the invention. Including but not limited to: documents CN109988801A, CN2018116198186, CN2018116198190, US20130316397A, US20150376673A, "MJ Anderson, JC Stark, CE Hodgman and MC Jewett. engineering Cell-Free protein synthesis with glucose synthesis [ J ]. FEBS Letters,2015,589(15)," 1723: "Y Lu. Advances in Cell-Free biosynthesystem Technology [ J ]. Current Developments in Biotechnology and Bioengineering,2019, Chapter 2, 23-45", "P reset, Smith and BC, Cell-Free amino acid regeneration systems [ J ]. and 9, Cell-Free regeneration systems and BC, all of which are incorporated by reference herein as direct references to the energy regeneration system [ J ] (see FIGS. 31, 9,6, 23-45) and 31. for energy regeneration.

In a preferred embodiment, the energy system is a sugar (mono-, di-, oligo-, or polysaccharide) and phosphate energy system, a sugar and phosphocreatine energy system, a phosphocreatine and phosphocreatine enzyme system, a phosphocreatine and phosphocreatine kinase system, a glycolysis pathway and its intermediate energy system (a monosaccharide and its glycolysis intermediate energy system, a glycogen and its glycolysis intermediate energy system), or a combination thereof. Specifically, the phosphate refers to an inorganic phosphate, preferably selected from orthophosphate, dihydrogen phosphate, metaphosphate, pyrophosphate or a combination thereof. The polysaccharide may be selected from polysaccharides including, but not limited to, starch, maltodextrin, corn dextrin, and the like. Examples of the disaccharide include sucrose, maltose and the like. The glycolytic pathway and its intermediate energy systems include, but are not limited to, glucose-based energy systems.

The concentration of each component in the energy system is not particularly limited, including but not limited to, the use of the presently reported protocols and equivalents thereof. The energy system used in example S3, the monosaccharide (glucose), polysaccharide (maltodextrin) and phosphate energy system; examples S11 and S12 employ a polysaccharide and phosphate energy system, wherein the polysaccharide is maltodextrin and the phosphate is tripotassium phosphate (potassium phosphate is equivalent to tripotassium phosphate).

Substrate for RNA synthesis

The substrate for the synthetic RNA is a mixture of nucleotides, one embodiment, selected from: nucleoside monophosphates, nucleoside triphosphates, or combinations thereof. Preferably a nucleoside triphosphate mixture (NTP). The mixture of nucleoside triphosphates is preferably a mixture of adenosine triphosphate, guanosine triphosphate, cytosine nucleoside triphosphate and uridine triphosphate. In the present invention, the concentration of each mononucleotide is not particularly limited, and it is measured as a nucleotide necessary for synthesizing a protein, and in one of the general preferred embodiments, the concentration of each mononucleotide is 0.5 mM-5 mM, and in another preferred embodiment, it is 1.0 mM-2.0 mM. The concentration of each single nucleotide is each independently exemplified by any one of the following concentrations, or a range of concentrations between any two of the following concentrations (the range includes both endpoints): 0.5mM, 1.0mM, 1.5mM, 2.0mM, 2.5mM, 3.0mM, 3.5mM, 4.0mM, 4.5mM, 5.0mM, 5.5mM, 6.0 mM.

Substrate for DNA synthesis

In the case of DNA amplification or in the case of a step involving DNA replication during an in vitro protein synthesis reaction, it is necessary to add a substrate for DNA synthesis. The substrate for synthesizing DNA is preferably a deoxynucleotide mixture, and more preferably a deoxynucleotide triphosphate mixture (dNTP).

When the in vitro cell-free protein synthesis system contains a DNA polymerase, it preferably also contains a substrate for synthesizing DNA.

Substrates for synthetic proteins

The substrate of the synthetic protein is an amino acid mixture. The nucleotides required for protein synthesis were measured. The concentration of each amino acid is usually 0.01 mM-5 mM in one of the preferred embodiments, and 0.1 mM-1 mM in another one of the preferred embodiments. The concentration of each amino acid is, independently, exemplified by any one of the following concentrations, or a range of concentrations between any two of the following concentrations (the range includes both endpoints): 0.1mM, 0.2mM, 0.4mM, 0.5mM, 1.0mM, 1.2mM, 1.5mM, 1.8mM, 2.0mM, 2.5mM, 3.0mM, 3.5mM, 4.0mM, 4.5mM, 5.0mM, 5.5mM, 6.0 mM.

The amino acid mixture at least comprises amino acid mixtures required by the process of synthesizing the foreign protein, and is selected from the group consisting of but not limited to: glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine, and histidine. The amino acid mixture required in the process of synthesizing the foreign protein not only comprises the amino acid forming the primary sequence of the foreign protein, but also comprises other amino acids involved in the synthesis process.

The amino acid mixture may include natural amino acids, unnatural amino acids.

The amino acid mixture may comprise_L-an amino acid,_D-amino acids, or combinations thereof.

The amino acid mixture may include, in addition to natural amino acids, unnatural amino acids,_D-amino acids, radioisotope labelled amino acids, modified amino acids, etc. The unnatural amino acid is not particularly limited and may be selected from the group consisting of: including but not limited to "Y Lu. cell-free synthetic biology: Engineering in an open world [ J ]].Synthetic and Systems Biotechnology,2017,2,23-27”、“W Gao,E Cho,Y Liu and Y Lu.Advances and challenges in cell-free incorporation of unnatural amino acids into proteins[J]Frontiers in pharmacology,2019,10:611 ", et al, and the unnatural amino acids reported or cited in the literature, whether cited directly or indirectly. The radioisotope-labeled amino acid is not particularly limited, and includes, but is not limited to, isotopic labeling employed in the reported field of protein synthesis. The modified amino acid is not particularly limited, including but not limited to modification by amino acid side groups.

Preferably, the amino acid mixture is a mixture of natural amino acids.

Other additive Components

The in vitro cell-free protein synthesis system can also comprise at least one of the following components: polyethylene glycol and/or its analogues, magnesium ions, potassium ions, antioxidants or reducing agents, trehalose, reaction promoters, buffers, aqueous solvents. Reference may be made to WO2016005982A1, US20060211083A1, "L Kai, VR Kaldenhoff and F Bernhard.Artificial environments for the co-translational stabilization of cell-free expressed proteins[J].PloS one,2013,8(2):e56637”、US20030119091A1, US20180245087A1, US5665563, WO2019033095A1, US9410170B2, US9528137B2 and the like and references cited therein, directly or indirectly.

In some preferred embodiments, the in vitro cell-free protein synthesis system further comprises crowding agents (crowding agents) for mimicking crowded macromolecular environments within the cell. The structure of the crowding agent is not particularly limited, and may be linear or non-linear, and the non-linear structure includes, but is not limited to, branched, multi-armed, cyclic, comb-shaped, tree-shaped, star-shaped, and other structural types. In some preferred examples, the crowding agent may be selected from the group consisting of: polyethylene glycol, polyvinyl alcohol (PVA), polyethylene glycol, dextran (dextran), polysucrose, sucrose polymers (e.g., Ficoll sucrose polymers), polyethylene (vinyl pyrrolidone) (PVP), albumin, the like, any combination thereof. Sources of albumin include, but are not limited to: human serum albumin, bovine serum albumin, porcine serum albumin; preferably, the albumin is human serum albumin (human serum albumin). The crowding agents can also be referred to as the crowding agents disclosed in the references "X Ge, D Luo and J xu. cell-free protein expression conditions [ J ]. PLoS One,2011,6(12): e 28707" and references cited therein. In some preferred embodiments, the concentration of crowding agent in the in vitro protein synthesis reaction mixture is sufficient to increase the amount of protein synthesis.

In some preferred embodiments, the crowding agent has a molecular weight of no more than 400 kDa. In some preferred embodiments, the crowding agent has a molecular weight of no more than 200 kDa. Generally, the molecular weight specification preferably has a molecular weight distribution of. + -. 10% or less. In one preferred embodiment, the amount of the crowding agent is selected from 0.5% to 15%, more preferably from 1% to 12%, in terms of the weight percent (wt%) or volume percent (% (v/v)) or mass volume concentration (% (w/v)) of the crowding agent in the in vitro protein synthesis reaction mixture; for example, any one of the following concentration values, or a concentration range between any two of the following concentration values: 1.0%, 1.5%, 2.0%, 2.5%, 3.0%, 3.5%, 4.0%, 4.5%, 5.0%, 5.5%, 6.0%, 6.5%, 7.0%, 7.5%, 8.0%, 8.5%, 9.0%, 9.5%, 10.0%, 10.5%, 11.0%, 11.5%, 12.0%, 12.5%, 13.0%, 13.5%, 14.0%, 14.5%, 15.0%.

In a preferred embodiment, the in vitro cell-free protein synthesis system further comprises polyethylene glycol and/or an analog thereof, which acts as a crowding agent and/or stabilizes mRNA (reference in Yin G, Swartz J R. enhanced multiple discrete bound protein folding in a cell-free system [ J]Biotechnology and bioengineering,2004,86(2): 188-. Such as polyethylene glycol, among others, can also adjust the system viscosity. Polyethylene glycol having CH₂CH₂Repeating units of O (EO units), commonly known as peg (polyethylene glycol), PEO (poly (ethylene oxide), poe (polyoxyethyleneene). Analogs of the polyethylene glycol include, but are not limited to, copolymers rich in EO units, polyethylene glycol derivatives, other polyoxyalkylenes that can act as crowding agents (e.g., polyoxypropylene, POP), derivatives of the other polyoxyalkylenes, and the like; the derivatives, taking polyethylene glycol derivatives as examples, include, but are not limited to, chemical modifications (such as methoxy polyethylene glycol, amino modifications, carboxyl modifications, etc.), amino acid modifications, polypeptide modifications, protein modifications, block polymers containing polyethylene glycol blocks, polymers containing polyethylene glycol side chains, etc. The concentration of polyethylene glycol or an analog thereof is not particularly limited, and in general, the concentration of polyethylene glycol or an analog thereof is 0.1% to 10%, preferably 0.1% to 8%, more preferably 0.5% to 4%, more preferably 1% to 2%, in terms of a mass-volume concentration (% (w/v)) of the protein synthesis system or in terms of a total weight (% by weight); unless otherwise specified, the present invention refers to the mass volume concentration in% (w/v), e.g., 2%, which means 2% (w/v), corresponding to 2g/100mL, 20 mg/mL. In some preferred embodiments, the polyethylene glycol and/or its analogues have a molecular weight of no more than 40000Da, and representative molecular weights are, for example: 200. 400, 500, 600, 800, 1000, 1200, 1400, 1450, 1500, 1600, 1800, 2000, 2500, 3000, 3350, 4000, 4500, 5000, 5500, 6000, 6500, 7000, 7500, 8000, 8500, 9000, 9500, 10000, 12000, 14000, 15000, 16000, 18000, 20000, 25000, 30000, 35000, 40000, combinations thereof; unit Da; the above-mentioned numbers being numericalEqual to the weight average molecular weight or the number average molecular weight. Generally, the molecular weight specification preferably has a molecular weight distribution of. + -. 10% or less. The polyethylene glycol and/or the analogue thereof preferably has a molecular weight of 200Da to 10000Da, more preferably 3000Da to 10000 Da. Another preferred embodiment is 200Da to 8000 Da. Another preferred embodiment is 200Da to 8000 Da. In the present invention, the molecular weight of polyethylene glycol or the like refers to the weight average molecular weight M unless otherwise specified_w. Representative PEGs are selected from the group consisting of: PEG200, PEG400, PEG1000, PEG1500, PEG2000, PEG3000, PEG3350, PEG5000, PEG6000, PEG8000, PEG10000, and the like, combinations thereof; wherein the number of 3350 and the like is numerically equal to the weight average molecular weight.

The magnesium ion is derived from a magnesium ion source, which may be selected from the group consisting of, but not limited to: magnesium acetate, magnesium glutamate (preferably magnesium L-glutamate), magnesium aspartate (preferably magnesium L-aspartate), magnesium chloride, magnesium phosphate, magnesium sulfate, magnesium citrate, magnesium hydrogen phosphate, magnesium iodide, magnesium lactate, magnesium nitrate, magnesium oxalate, and combinations thereof. A preferred embodiment has a concentration range of 0.1mM to 50 mM. In another preferred embodiment, the concentration of the compound is in the range of 0.5 mM-20 mM. In another preferred embodiment, the concentration of the compound is in the range of 1 mM-10 mM. In a preferred embodiment, the magnesium ion source is any one of magnesium aspartate, magnesium acetate, and glutaminase, or a mixture of any combination thereof.

The potassium ion is derived from a potassium ion source, which may be selected from the group consisting of, but not limited to: potassium acetate, potassium glutamate (preferably L-potassium glutamate), potassium chloride, potassium phosphate, potassium sulfate, potassium citrate, potassium hydrogen phosphate, potassium iodide, potassium lactate, potassium nitrate, potassium oxalate, and combinations thereof. In a preferred embodiment, the concentration is in the range of 0 to 500 mM. In another preferred embodiment, the concentration is in the range of 1mM to 250 mM. In another preferred embodiment, the concentration is in the range of 5mM to 200 mM. In another preferred embodiment, the concentration of the compound is in the range of 10mM to 100 mM.

The optimization and optimization of polyethylene glycol, magnesium ion and potassium ion reported in WO2016005982A1 are also incorporated herein by reference.

The antioxidant, which may also be referred to as a reducing agent. Optional compounds include, but are not limited to, Dithiothreitol (DTT), 2-mercaptoethanesulfonic acid, 2-mercaptoethanol, reduced Glutathione (GSH), tricarboxymethylphosphonic acid (TCEP), 3-mercapto-1, 2-propanediol (MPD), and the like. One of the preferred embodiments is dithiothreitol. The DTT is obtained by adopting the conventional use concentration; one embodiment is 0.5mM to 10 mM; in another embodiment, the concentration is 0 to 1.7 mM.

The reaction promoter includes, but is not limited to, a reaction promoter (e.g., aluminum salt) as provided in CN 109971783A.

The buffer is mainly used for maintaining the pH environment of the system. One of the preferred embodiments is selected from any one or a combination of the following: Tris-HCl, Tris base, HEPES (4-hydroxyethylpiperazine ethanesulfonic acid system).

The aqueous solvent is preferably a buffer.

Specific embodiments of the in vitro protein Synthesis System

In a preferred embodiment, the in vitro protein synthesis system comprises a cell extract, an endogenously expressed RNA polymerase (contained in the cell extract) or an exogenously added RNA polymerase, an energy system, a substrate for RNA synthesis, a substrate for protein synthesis, a crowding agent, magnesium ions, potassium ions, a buffer, and optionally any one of the following components: an exogenous nucleic acid template (independently preferably a DNA template) encoding an RNA polymerase, an endogenously expressed DNA polymerase or an exogenously added DNA polymerase, an exogenous nucleic acid template (independently preferably a DNA template) encoding a DNA polymerase, a substrate for DNA synthesis, an antioxidant or reducing agent, trehalose, a reaction promoter, an aqueous solvent. The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

In a preferred embodiment, the in vitro protein synthesis system comprises a cell extract (engineered by integrating a gene encoding RNA polymerase into the genome of the cell or by inserting it into an intracellular episomal plasmid) and further comprises one or more or all of the components selected from the group consisting of: potassium 4-hydroxyethylpiperazine ethanesulfonate (HEPES-K) or Tris, potassium acetate, magnesium glutamate, magnesium aspartate, nucleoside triphosphate mixture (NTP), amino acid mixture, creatine phosphate, creatinase, creatine phosphate kinase, Dithiothreitol (DTT), rnase inhibitor, L-arabinose, glucose, sucrose, starch, dextrin, corn dextrin, maltodextrin, phosphate salts (e.g. potassium phosphate). The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

In a preferred embodiment, the in vitro protein synthesis system comprises a cell extract and further comprises one or more or all components selected from the group consisting of: HEPES-K or Tris, potassium acetate, magnesium glutamate, magnesium aspartate, nucleoside triphosphate mixtures, amino acid mixtures, phosphocreatine kinase, DTT, RNase inhibitor, L-arabinose, glucose, sucrose, starch, dextrin, corn dextrin, maltodextrin, phosphate (such as potassium phosphate), exogenous T7 RNA polymerase, exogenous phi29 DNA polymerase, deoxynucleoside triphosphate mixtures. The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

In a preferred embodiment, the in vitro protein synthesis system comprises a cell extract (optionally, a gene encoding an RNA polymerase integrated into the genome of the cell or inserted into an intracellular episomal plasmid for strain engineering) and further comprises one or more or all of the components selected from the group consisting of: HEPES-K or Tris (hydroxymethyl) aminomethane hydrochloride (Tris & HCl), potassium acetate, magnesium glutamate (preferably magnesium L-glutamate), magnesium aspartate (preferably magnesium L-aspartate), a nucleoside triphosphate mixture, an amino acid mixture, creatine phosphate, phosphocreatinase, phosphocreatine kinase, DTT, an RNase inhibitor, L-arabinose, glucose, sucrose, starch, dextrin, corn dextrin, maltodextrin, potassium phosphate, polyethylene glycol, dextran, a sucrose polymer, an alumina promoter, exogenous T7 RNA polymerase, exogenous phi29 DNA polymerase, a DNA template encoding T7 RNA polymerase, a DNA template encoding phi29 DNA polymerase, a deoxynucleoside triphosphate mixture. The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

In another preferred embodiment, the system for in vitro protein synthesis comprises a cell extract and one or more or all of the following components selected from the group consisting of: Tris-HCl (pH8.0), potassium acetate, magnesium glutamate, magnesium aspartate (preferably magnesium L-aspartate), dithiothreitol, polyethylene glycol, dextran, sucrose polymer, glucose, L-arabinose, nucleoside triphosphate mixture (mixture of four nucleoside triphosphates, same concentration of single nucleoside triphosphate), amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine; wherein, same concentration of single amino acid), potassium phosphate, exogenous T7 RNA polymerase, exogenous phi29 DNA polymerase, deoxynucleoside triphosphate mixture. The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

Specifically, one of the preferred embodiments is a cell extract containing 50% to 80% (v/v) of the cell extract, and further containing one or more or all of the components selected from the group consisting of: 9.78mM Tris-HCl pH8.0, 20 mM-80 mM potassium acetate, 2 mM-10 mM magnesium acetate, 1.5 mM-6 mM magnesium L-aspartate, 0.4 mM-5 mM dithiothreitol (e.g., 0.44mM), 0.5% to 5% (w/v) polyethylene glycol (e.g., 2% (w/v)), 0.5 mM-5 mM four nucleoside triphosphates (the concentrations of the single nucleoside triphosphates are the same, e.g., 1.8mM), 0.1 mM-1 mM amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine, the concentrations of the single amino acids are the same, e.g., 0.5mM), 5 mM-110 mM L-arabinose, 200 mM-400 mM maltodextrin (measured as glucose monomer, e.g., about 52mg/mL at 320 mM), 10mM to 40mM potassium phosphate. The cell extract is preferably a eukaryotic cell extract, more preferably a yeast cell extract, and more preferably in one of the ways is a kluyveromyces lactis cell extract.

One embodiment of the in vitro protein synthesis system further includes, but is not limited to, for example, the cell-free E.coli-based protein synthesis system described in WO2016005982A 1. Other citations of the present invention, including but not limited to in vitro cell-free protein synthesis systems based on wheat germ cells, rabbit reticulocytes, Saccharomyces cerevisiae, Pichia pastoris, Kluyveromyces marxianus, as described in direct and indirect citations thereof, are also incorporated herein as embodiments. For example, the in vitro Cell-Free protein synthesis system described in the "Lu, Y.Advances in Cell-Free biosynthesis technology. Current Developments in Biotechnology and Bioengineering,2019, Chapter 2, 23-45" section including but not limited to the "2.1 Systems and Advantages" section, pages 27-28, can be used as an in vitro Cell-Free protein synthesis system for carrying out the present invention. For example, in vitro cell-free protein synthesis systems described in documents CN106978349A, CN108535489A, CN108690139A, CN108949801A, CN108642076A, CN109022478A, CN109423496A, CN109423497A, CN109837293A, CN109971783A, CN109988801A, CN110551700A, CN109971775A, CN110551745A, CN110551700A, CN2018116083534, CN2018116198186, CN2018116198190, CN2019102128619, CN2019102355148, CN 20191072813, CN 2011209166163, CN 2018108848, CN2018109550734, CN2018111131300, CN 2018111477, CN 2018162093, CN201911418151.8, CN202010069383.3 and references cited therein can be used as in vitro cell-free protein synthesis systems for implementing the present invention.

Foreign proteins

The foreign protein suitable for use in the in vitro protein synthesis system of the present invention is not particularly limited as long as it can be synthesized in vitro based on a cell extract (including a prokaryotic cell extract, a eukaryotic cell extract; particularly a eukaryotic cell extract, more particularly a yeast cell extract, more particularly a Kluyveromyces lactis cell extract). Exogenous proteins disclosed in the prior art as being suitable for use in an in vitro protein synthesis system for prokaryotic cell extracts, eukaryotic cell extracts (preferably yeast cell extracts, more preferably from kluyveromyces lactis), or endogenous proteins suitable for use in a prokaryotic cell system or eukaryotic cell system (preferably yeast cell systems, more preferably kluyveromyces lactis) synthesized in a cell, can also be synthesized using the system of the present invention, or in an attempt to synthesize using the in vitro protein synthesis system provided by the present invention.

The application fields of the exogenous protein include but are not limited to the fields of biomedicine, molecular biology, medicine, in vitro detection, medical diagnosis, regenerative medicine, bioengineering, tissue engineering, stem cell engineering, genetic engineering, polymer engineering, surface engineering, nano engineering, cosmetics, food additives, nutritional agents, agriculture, feed, living goods, washing, environment, chemical dyeing, fluorescent labeling and the like.

Types of foreign proteins include, but are not limited to, polypeptides ("foreign proteins" in the present invention broadly include polypeptides), fluorescent proteins, enzymes and corresponding zymogens, antibodies and fragments thereof, antigens, immunoglobulins, hormones, collagens, polyamino acids, vaccines and the like, partial domains of any of the foregoing, subunits or fragments of any of the foregoing, and variants of any of the foregoing. The "subunit or fragment of any one of the aforementioned proteins" includes a subunit or fragment of "a partial domain of any one of the aforementioned proteins". The "variant of any one of the aforementioned proteins" includes a variant of "a partial domain of any one of the aforementioned proteins, a subunit or fragment of any one of the aforementioned proteins". Such "variants of any of the foregoing proteins" include, but are not limited to, mutants of any of the foregoing proteins. In the present invention, the meanings of two or more "preceding" cases in succession in other positions are similarly explained.

The structure of the foreign protein can be a complete structure, and can also be selected from corresponding partial domains, subunits, fragments, dimers, multimers, fusion proteins, glycoproteins and the like.

For example, the foreign proteins that can be synthesized by the in vitro protein synthesis system of the present invention can be selected from the group consisting of, but not limited to, any one of the following proteins, fusion proteins in any combination, and mixtures in any combination: luciferase (e.g., firefly luciferase), Green Fluorescent Protein (GFP), enhanced green fluorescent protein (eGFP), Yellow Fluorescent Protein (YFP), aminoacyl tRNA synthetase, Glyceraldehyde-3-phosphate dehydrogenase, catalase, actin, variable regions of antibodies, alpha-amylase, enteromycin A, hepatitis C virus E2 glycoprotein, insulin precursor, interferon alpha A, interleukin-1 beta, lysozyme, serum albumin, single-chain antibody fragment (scFV), transthyretin, tyrosinase, xylanase, Escherichia coli beta-galactosidase (beta-galactosidase, LacZ), human Lysine-tRNA synthetase (Lysine-tRNA synthetase), human Leucine-tRNA synthetase (Leucine-tRNA synthetase), Arabidopsis Glyceraldehyde-3-phosphate dehydrogenase (Glycerealdehyde-3-phosphate dehydrogenase), and combinations thereof, Murine Catalase (Catalase), etc., a partial domain of any of the foregoing proteins, a subunit or fragment of any of the foregoing proteins, or a variant of any of the foregoing (as defined above, including mutants, such as, for example, luciferase mutants, mutants of eGFP). Reference may also be made to patent document CN 109423496A. The mixture in any combination may include any one of the proteins described above, and may also include any combination of the fusion proteins described above.

In a preferred embodiment, GFP, eGFP or a mutant thereof is used as a foreign protein to evaluate the protein synthesis ability of the in vitro protein synthesis system.

Exogenous nucleic acid templates (including nucleic acid templates encoding exogenous proteins)

The exogenous nucleic acid template of the present invention refers to a nucleic acid template encoding an exogenous protein, unless otherwise specified. In addition, the exogenous nucleic acid template of the present invention, where indicated, may also include nucleic acid templates encoding protein factors or proteases required for in vitro protein synthesis processes, such as, for example, exogenous nucleic acid templates encoding RNA polymerase, exogenous nucleic acid templates encoding DNA polymerase.

The reaction for in vitro synthesis of the foreign protein cannot proceed unless the nucleic acid template encoding the foreign protein is removed.

The nucleic acid templates encoding the foreign protein in any of the embodiments of the invention may each independently be DNA templates, mRNA templates, or combinations thereof.

The nucleic acid templates encoding the foreign protein in any of the embodiments of the present invention may each independently preferably be DNA templates.

The nucleic acid template serves as a direct template (mRNA), an indirect template (DNA), or a combination thereof for the synthesis of the foreign protein.

The nucleic acid template encoding the foreign protein may include a non-coding region. The expression product can be polypeptide or protein, and can also be fusion protein. One translation (or transcription translation) process is performed on one nucleic acid template molecule, allowing the number of polypeptide or protein molecules synthesized to be 1,2, or more.

The transcription and translation mode protein synthesis process takes a DNA template as an indirect template, and the translation mode protein synthesis process can only adopt an mRNA template as a direct template.

Preferably, the in vitro protein synthesis system of the present invention is an in vitro transcription translation system, i.e., IVTT system, using a DNA template as a nucleic acid template encoding a foreign protein.

The nucleic acid template encoding the foreign protein contains translation-related elements required for synthesis of the foreign protein.

In any embodiment of the present invention, it is preferred that the nucleic acid template encoding the foreign protein further comprises a promoter element recognized by the cell extract.

In one preferred embodiment, the nucleic acid template encoding the foreign protein contains a promoter element recognized by the cell extract.

In one preferred mode, the gene transcription process of the foreign protein is initiated by the T7 promoter on the nucleic acid template.

In one preferred mode, the T7 promoter is located at the upstream of the coding sequence of the exogenous protein of the nucleic acid template, the transcription program of the exogenous protein is started by the T7 promoter, and the cell extract in the in vitro cell-free protein synthesis system contains endogenously expressed T7 RNA polymerase.

In a preferred embodiment, the nucleic acid template encoding the foreign protein comprises a foreign protein translation system, a resistance gene translation system, and a Lac repressor translation system; the translation systems described above each include a corresponding promoter.

In a preferred embodiment, the nucleic acid template encoding the foreign protein further comprises a gene controlling the copy number of the plasmid.

In one preferred embodiment, the nucleic acid template encoding the foreign protein further comprises a transcription enhancing element, such as a kozak sequence.

In one preferred embodiment, the nucleic acid template encoding the foreign protein further comprises a translation enhancing element, such as a translation enhancer element, an IRES element, a kozak sequence, or the like.

Exogenous DNA template (including DNA template encoding exogenous protein)

The foreign DNA template of the present invention refers to a DNA template encoding a foreign protein, unless otherwise specified.

The exogenous DNA template of the present invention may be selected from DNA, cDNA, methylated DNA, or a combination thereof. Wherein, the cDNA can be obtained by reverse transcription of RNA or miRNA. miRNA (MicroRNA) is a non-coding single-stranded RNA molecule which is coded by endogenous genes and has the length of about 20-25 nucleotides.

The DNA template for coding the foreign protein contains a coding sequence of the foreign protein.

Preferably, the DNA template for encoding the foreign protein contains a gene encoding the foreign protein.

The DNA template for encoding the foreign protein is determined according to the foreign protein.

The DNA template encoding the foreign protein may further contain other functional elements selected from the group consisting of promoters, terminators, enhancers (for example, CN109423497A, CN109022478A, CN109837293A (CN201711194355.9), CN109971775A) and the like, and enhancer elements described in the cited documents thereof, such as omega sequences and their homologous sequences, combined enhancer elements, kozak sequences (refer to CN109022478A, CN109837293A, CN109971775A and the like and the cited documents thereof), IRES elements (refer to internal ribosome entry sequences, refer to CN109022478A, CN109423497A and the like and the cited documents thereof), Multiple Cloning Sites (MCS), genes controlling plasmid copy number, and the like. It may also contain coding sequences for other amino acid chains, such as signal sequence, leader sequence, functional tags (e.g., purification tags), and linker peptides. It may further contain a 5 'untranslated sequence and a 3' untranslated sequence.

The DNA template encoding the foreign protein preferably contains a promoter element. The promoter element is required to be recognized by the cell extract or other components of the in vitro protein synthesis system used; it may be a promoter recognized by a wild-type cell extract, or a strain from which a cell extract is derived may be modified to recognize the promoter. The promoter in the DNA template for encoding the foreign protein can be selected from the following group: AOD1, MOX, AUG1, AOX1, GAP, FLD1, PEX8, YPT1, LAC4, PGK, ADH4, AMY1, GAM1, XYL1, XPR2, TEF, RPS7, T7, or a combination thereof. References include, but are not limited to, the following and citations thereof: "Cereghino G. applications of yeast in Biotechnology: protein production and genetic analysis. Current operation in Biotechnology,1999,10(5), 422-" 427 ".

In examples S3-S12, the foreign DNA template uses T7 promoter to start the transcription process of the foreign protein; the T7 promoter is a strong promoter capable of specifically reacting to T7 RNA polymerase.

Preferably, the gene transcription process of the foreign protein is initiated by the T7 promoter on the foreign DNA template.

Regarding the concentration of the exogenous DNA template, the amount of the exogenous protein to be expressed is determined according to the experimental protocol. In a preferred embodiment, the concentration of the exogenous DNA template is 1 ng/. mu.L to 400 ng/. mu.L. In another preferred embodiment, the concentration of the exogenous DNA template is 1 ng/. mu.L to 80 ng/. mu.L. In another preferred embodiment, the concentration of the exogenous DNA template is 5 ng/. mu.L to 50 ng/. mu.L. In the present invention, the DNA template is added at a final concentration, that is, at an initial concentration of the in vitro protein synthesis reaction, unless otherwise specified.

The exogenous DNA template can be circular DNA or linear DNA; may be single-stranded or double-stranded. The gene encoding the foreign protein may be selected from the group including, but not limited to: genome sequence and cDNA sequence. The exogenous DNA template may also contain a promoter sequence, a 5 'untranslated sequence, and a 3' untranslated sequence.

In a preferred embodiment, the exogenous DNA template further comprises any one or a combination of elements selected from the group consisting of: promoters, terminators, poly (a) elements, transport elements, gene targeting elements, selection marker genes, enhancers, IRES elements, kozak sequences, resistance genes, transposase-encoding genes, signal sequences (signal sequences), leader sequences (for example, as described in CN109022478A and cited therein), genes controlling plasmid copy number (rop genes), tags enhancing translation level (for example, polypeptide tags as described in CN 2019112066163), and the like. Reference may be made to US20060211083a1 and the like.

The exogenous DNA template may also be constructed in an expression vector. One of ordinary skill in the art can construct an expression vector containing a gene encoding a foreign protein using well-known methods. These methods include in vitro recombinant DNA techniques, DNA synthesis techniques, in vivo recombinant techniques, and the like.

For example, the nucleic acid construct of the "Z1-Z2" structure is inserted into the cloning site of a plasmid vector as plasmid DNA; wherein Z1 is a promoter, "-" is a covalent bond or a nucleotide fragment, and Z2 is a coding sequence of a foreign protein. Among them, one of preferable modes for Z1 is the T7 promoter.

In a preferred embodiment, the exogenous DNA template is a circular DNA, more preferably a plasmid DNA. The corresponding DNA plasmid is not particularly limited as long as it can react with a cell extract of the system to synthesize a foreign protein. Generally, the plasmid contains functional elements such as a promoter, a terminator, and an untranslated region (UTR). One of the preferable modes of the plasmid is a plasmid containing a promoter that can be recognized by a cell extract component. For example, a plasmid containing the T7 promoter can be theoretically used as an expression vector for the foreign DNA template used in examples S3-S12. For example, pET series plasmids of Escherichia coli, pGEM series plasmids, etc., may be used in place of the plasmid vectors of the Kluyveromyces lactis extracts of examples S3-S12 to practice the present invention. Another preferred mode of the plasmid is to contain a promoter that can be recognized by an exogenously added component.

Taking the example that the exogenous DNA template initiates the transcription of the exogenous protein by using a T7 promoter, the T7 promoter can be initiated by recognition of endogenously expressed T7 RNA polymerase in cell extracts, and can also be initiated by recognition of exogenously added T7 RNA polymerase.

Linear DNA can be obtained by in vitro nucleic acid amplification techniques. The amplification techniques that can be used are not particularly limited and include, but are not limited to, PCR amplification techniques, isothermal amplification techniques, room temperature amplification techniques, and the like. Wherein the constant temperature amplification technology is preferably a normal temperature amplification technology. In a preferred embodiment, the exogenous DNA template is a linear DNA and is a PCR linear fragment. The PCR linear fragment can be obtained by reported PCR technology.

In another preferred embodiment, the exogenous DNA template is a linear DNA and is a double-stranded linear DNA obtained by an amplification system. The amplification system is not particularly limited, and may be selected from the group consisting of, but not limited to, existing commercial kits, and amplification systems reported in the literature, as long as it can amplify the DNA template encoding the foreign protein of the present invention. Examples include, but are not limited to, commercial DNA amplification systems provided by Biomatch, Neta Scientific Inc., ABM, Thermo Fisher Scientific, Expedeon, Vivantis, and the like.

In another preferred embodiment, double-stranded DNA is used as the foreign DNA template and is constructed in a circular plasmid vector. The plasmid vector used typically contains functional elements such as the T7 promoter, the T7 terminator and/or the 5 'and 3' UTR.

As a preferred embodiment, in example S3-S12, double-stranded DNA is used as a foreign DNA template and constructed in a circular plasmid vector; these plasmids contain the T7 promoter as a promoter for transcription and translation of foreign proteins; in examples S2-S12, T7 RNA polymerase was endogenously expressed by the modified Kluyveromyces lactis, cell extracts were prepared from the modified strains, and an in vitro cell-free protein synthesis system was constructed in which the T7 promoter was adapted for cell-free expression of various proteins in vitro. The plasmid also comprises functional elements such as a T7 terminator, UTR and the like.

In one embodiment, the following functional elements are included in the plasmid DNA: a promoter, a 5 'non-coding region, a coding sequence of a foreign protein, a 3' non-coding region, a terminator, a replication origin (f1 ori), an AmpR promoter, an ampicillin resistance gene, a high copy number replication origin (ori), a gene controlling the copy number of a plasmid (rop gene), a LacI promoter, a coding sequence of LacI.

In one embodiment, the plasmid DNA comprises at least the structural elements identified in Table 1. Specific examples are the plasmid structures shown in FIG. 1.

TABLE 1 description of the structural elements of the plasmid DNA (pD2P-mEGFP) indicated in FIG. 1

In another embodiment, in addition to the functional elements identified in FIG. 1, there is a purification tag, such as a polyhistidine tag (His-tag), between the 5' UTR and the coding sequence of mEGFP. As shown, for example, in figure 2.

In another embodiment, in addition to the functional elements identified in FIG. 1, a kozak sequence is present downstream of the 5' UTR to increase translation levels. As shown, for example, in figure 2.

In another embodiment, in addition to the functional elements indicated in fig. 1, there is a coding sequence for a signal peptide (signal sequence) between the 5 'UTR and the coding sequence for the mmefp, downstream of the 5' UTR.

In another embodiment, the following functional elements are included in the plasmid DNA: a promoter, a 5 'non-coding region, a leader sequence, a coding sequence of a foreign protein, a 3' non-coding region, a terminator, a replication initiation site (f1 ori), an AmpR promoter, an ampicillin resistance gene, a high copy number replication initiation site (ori), a gene controlling the copy number of a plasmid (rop gene), a LacI promoter, a coding sequence of LacI. Examples are the plasmid structures shown in FIG. 3. Among them, rop gene is not indicated, and a T7 promoter and a LAC4 terminator are used in a translation system of a foreign protein.

In another embodiment, the following functional elements are included in the plasmid DNA: a promoter, a 5 'non-coding region, a coding sequence of a signal peptide, a coding sequence of a foreign protein, a 3' non-coding region, a terminator, an ori of f1, an AmpR promoter, an ampicillin resistance gene, an ori, a rop gene, a LacI promoter, and a coding sequence of LacI. Specifically, for example, the following functional elements are included in the plasmid DNA: a T7 promoter, a 5 'non-coding region, a coding sequence of a signal peptide, a coding sequence of a foreign protein mEGFP, a 3' non-coding region, a T7 terminator, an f1 ori, an AmpR promoter, an ampicillin resistance gene, an ori, a rop gene, a LacI promoter and a coding sequence of lacI.

In another embodiment, the following functional elements are included in the plasmid DNA: a promoter, a 5 'non-coding region, a coding sequence for a signal peptide, a coding sequence for a purification tag, a Multiple Cloning Site (MCS), a coding sequence for a foreign protein, a 3' non-coding region, a terminator, an ori f1, an AmpR promoter, an ampicillin resistance gene, an ori, a rop gene, a LacI promoter, a coding sequence for lacI. Specifically, for example, the following functional elements are included in the plasmid DNA: a T7 promoter, a 5 'non-coding region, a coding sequence of a signal peptide, a coding sequence of a purification tag, MCS, a coding sequence of a foreign protein mEGFP, a 3' non-coding region, a LAC4 terminator or a T7 terminator, f1 ori, an AmpR promoter, an ampicillin resistance gene, ori, a rop gene, a LacI promoter, a coding sequence of lacI.

The basic structure of the plasmid and the method for inserting the foreign protein encoding gene into the plasmid vector can be achieved by conventional techniques in the art, and are not described herein. For example, patent documents CN108690139A, CN107574179A, CN108949801A and the like can be referred to. For example, the basic structure of the plasmid can be found in CN 201910460987.8.

In the present invention, the concentration of the DNA template encoding a non-foreign protein can be determined according to the desired expression level of the non-foreign protein, with reference to the amount of the above-mentioned DNA template encoding a foreign protein. The non-foreign protein refers to a translation product that is not intended to be expressed but synthesized to facilitate the reaction.

Exogenous mRNA template

The invention can also adopt exogenous mRNA template to replace exogenous DNA template, or adopt the mixture of exogenous mRNA template and exogenous DNA template, add into the above-mentioned in vitro cell-free protein synthesis system, carry on the synthetic reaction of in vitro protein, synthesize the exogenous protein encoded by mRNA template.

In vitro nucleic acid amplification (in vitro nucleic acid amplification technique, in vitro nucleic acid amplification method)

"in vitro nucleic acid amplification" is the process of replicating nucleic acids in vitro.

Nucleic acid templates for use in the in vitro protein synthesis system of the invention, including nucleic acid templates encoding foreign proteins and optionally nucleic acid templates encoding other proteins, can be used to prepare template materials using in vitro nucleic acid amplification techniques.

The in vitro nucleic acid amplification technique that can be used is not particularly limited, and may be non-isothermal amplification or isothermal amplification (also referred to as isothermal amplification). Including but not limited to Polymerase Chain Reaction (PCR) technology, isothermal amplification technology, room temperature amplification technology, etc. Wherein the constant temperature amplification technology is preferably a normal temperature amplification technology.

Among them, the isothermal amplification technique can be referred to "J Kim et al, Isothermal DNA amplification in biology: stratages and applications [ J ]. Bioanalysis,2011,3(2): 227-: the helicase-dependent amplification system [ J ]. cell. mol. Life Sci, 2009,66: 3325-: 91-96, Wanlin, et al, research on isothermal nucleic acid amplification techniques, progress [ J ]. Biotechnology communications, 2011,22(2) ", and others, and the isothermal amplification techniques disclosed in the references cited therein. Specifically, nucleic acid isothermal amplification methods that can be used in the technical means of the present invention include, but are not limited to: loop-mediated isothermal amplification method/loop-mediated isothermal amplification (LAMP), strand displacement amplification method/strand displacement amplification method (SDA), nucleic acid sequence-dependent amplification method (NASBA), rolling circle amplification method (RCA), nicking enzyme isothermal amplification method (nicking enzyme amplification reaction, NEAR), helicase-dependent isothermal amplification method (HDA), transcription-dependent amplification method, hybrid capture method, transcription-mediated amplification method (TMA), recombinase-mediated amplification method (RAA), recombinase polymerase amplification method (RPA), and the like, with one of the preferred embodiments being the rolling circle amplification method.

The in vitro nucleic acid amplification method, particularly the normal temperature amplification method, which can be used in the present invention is not particularly limited, and the normal temperature amplification techniques that can be used in the in vitro cell-free system in the prior art are all included in the scope of the present invention by reference, including but not limited to Rolling Circle Amplification (RCA), polymerase amplification with combinatorial enzymes (RPA), Strand Displacement Amplification (SDA), Helicase Dependent Amplification (HDA), 3SR (self-sustained sequence amplification), and the like. References, including but not limited to: the documents "Nicole E.Gregorio, Max Z.Levine and Javin P.Oza.A.User's Guide to Cell-Free Protein Synthesis [ J ]. Methods protocols.2019, 2, 24", "Y Lu.Advances in Cell-Free biosynthesis Technology [ J ]. Current Developments in Biotechnology and Bioengineering,2019, Chapter 2, 23-45", "Y Lu.cell-Free biosynthesis Technology: Engineering in an open world System [ J ]. Synthesis and Biotechnology,2017,2, 23-27" and the like, as well as documents cited directly or indirectly, and the in vitro nucleic acid amplification Methods (in particular, ambient temperature amplification Methods) disclosed therein are all used as technical means of the present invention, and are incorporated herein by reference.

In vitro nucleic acid amplification of the invention may also employ amplification techniques such as SMART amplification method (SMAP), Single Primer Isothermal Amplification (SPIA), exponential amplification reaction (EXPAR), thermostable HDA (tHDA), Multiple Displacement Amplification (MDA), restriction assisted RCA, and the like.

The in vitro nucleic acid amplification reaction of the present invention may be carried out continuously at a specific temperature or temperature range which is advantageous for the reaction. Any of the ambient amplification techniques of the invention also allows for the performance of conditions with fluctuations in temperature.

Incubation reaction (in vitro protein synthesis reaction)

Adding a nucleic acid template (preferably a DNA template) for encoding the foreign protein into the in vitro cell-free protein synthesis system, and carrying out incubation reaction for a period of time to express and synthesize the foreign protein.

The conditions for carrying out the in vitro protein synthesis reaction are determined according to a specific in vitro cell-free protein synthesis system, and reference may be made to reported reaction conditions including, but not limited to, the reaction conditions described in documents CN106978349A, CN108535489A, CN108642076A, and the like. The in vitro protein synthesis reaction may be carried out continuously at a specific temperature or temperature range which is favorable for the reaction. In one preferred embodiment, the temperature of the mixture throughout the reaction time varies by less than 25% (e.g., less than 20%, less than 15%, less than 10%, less than 5%) in degrees celsius and/or the temperature of the mixture throughout the reaction time varies by less than 15 ℃ (e.g., less than 10 ℃, less than 5 ℃, less than 2 ℃, or less than 1 ℃) in degrees celsius. Preferably, normal temperature conditions are used for in vitro protein synthesis. The normal temperature is preferably from room temperature to 37 ℃, and particularly preferably from 20 ℃ to 37 ℃. One of the preferred modes is 25 ℃ to 37 ℃. Another preferred embodiment is 20 ℃ to 30 ℃. The reported normal-temperature protein synthesis method or isothermal protein synthesis method suitable for normal-temperature conditions can be used for implementing the technical scheme of the invention.

The reaction time can be comprehensively determined according to the factors such as the consumption of raw materials (such as the amount of reaction substrate, the content of protein expected to be obtained and the like), the reaction efficiency and the like.

In one embodiment, the reaction time is 1 to 72 hours.

In another embodiment, the reaction time is 3 to 24 hours.

In another embodiment, the reaction time is 3 to 21 hours.

In another embodiment, the reaction time is 6 to 21 hours.

The reaction time may also be selected from any of the following time periods, or a time period between any two time periods (both endpoints inclusive): 3h, 4h, 5h, 6h, 7h, 8h, 9h, 10h, 11h, 12h, 13h, 14h, 15h, 16h, 17h, 18h, 19h, 20h, 21h, 22h, 23h, 24h, 36h and 48 h.

Separation or/and detection step

The method for the in vitro cell-free synthesis of the foreign protein may optionally further comprise the step of isolating or/and detecting the foreign protein. The separation or/and detection method can be realized by adopting a conventional technical method.

In a second aspect, the present invention provides an in vitro protein synthesis kit comprising:

(i) an in vitro cell-free protein synthesis system according to the in vitro cell-free synthesis method for a foreign protein of the first aspect;

(ii) optionally including a nucleic acid template encoding a foreign protein;

(iii) optionally a reaction vessel;

(iv) a hydrophobic phase;

the hydrophobic phase is used for constructing the hydrophobic interface in the in vitro cell-free synthesis method of the foreign protein provided by the first aspect;

the component can be used for constructing a hydrophobic interface which can be in surface contact with an in-vitro acellular protein synthesis system of a water phase;

(v) a label or instructions.

(ii) said (i) and (i) together provide the translation-related elements required for synthesis of the foreign protein.

The components of the in vitro cell-free protein synthesis system are placed in one or more containers in the form of dry powder, liquid, emulsion, suspension, or a combination thereof. One of the preferred modes of the dry powder is freeze-dried powder. The liquid comprises a pure substance and a solution.

The in vitro protein synthesis kit can be used for carrying out in vitro protein synthesis reaction to synthesize exogenous protein.

The respective parts of the in vitro protein synthesis kit correspond to the respective components of the in vitro cell-free synthesis method for a foreign protein according to the first aspect.

The hydrophobic phase may be a phase of matter or a device that creates a hydrophobic interface.

The nucleic acid template encoding the foreign protein is a DNA template, an mRNA template, or a combination thereof.

Preferably, the nucleic acid template encoding the foreign protein is a DNA template.

Examples of the substrate of the reaction vessel include a cell culture plate, a centrifuge tube, and the like. Such as a six-well plate, a twelve-well plate, a twenty-four-well plate, a forty-eight-well plate, a ninety-six-well plate, and the like. Can be a flat bottom plate or a sharp bottom plate.

In a preferred embodiment, the components of the in vitro cell-free protein synthesis system together comprise an aqueous solution. The kit includes a container for the aqueous solution.

In a preferred form, the kit comprises separate containers each comprising: (a) a cell extract; (b) an energy system; (c) optionally, a nucleic acid template; (d) a buffer solution; (e) optionally, a pH adjusting component; (f) optionally, a number of other solid components; (h) optionally, several other liquid components. Wherein components (a), (b), (c) are each independently a dry powder or an aqueous solution. Wherein components (c), (e), (f) are each independently present or absent. The "number" herein means 1,2 or more.

In a preferred mode, each component is divided into a dry powder part and a liquid reagent part. The kit comprises two containers, one container contains a dry powder component, and the other container contains a liquid reagent component. The liquid reagent includes all systems containing liquid phase, and can be homogeneous system or mixed system, including but not limited to pure substance, solution, emulsion, suspension, and combination thereof.

In one preferred mode, each component is divided into dry powder, buffer solution and other liquid reagents, and solvent water is optionally included.

In a preferred mode, the following components are respectively contained in different containers: a cell extract (containing endogenously expressed RNA polymerase and optionally endogenously expressed DNA polymerase), an energy system, a substrate for RNA synthesis, a substrate for protein synthesis, a crowding agent, exogenous magnesium ions, exogenous potassium ions, a buffer solution, and optionally a packaging container comprising any one of the following components: exogenously added RNA polymerase, exogenously added DNA template for coding RNA polymerase, exogenously added DNA template for coding RNA polymerase, antioxidant or reducing agent, trehalose, reaction promoter and aqueous solvent. The RNA polymerase is independently more preferably T7 RNA polymerase. The DNA polymerase is independently more preferably phi29 DNA polymerase. The cell extract contains transfer RNA (tRNA), ribosome (ribosome). The cell extract is preferably a eukaryotic cell extract, more preferably a kluyveromyces lactis cell extract.

In a preferred mode, the following components are respectively contained in different containers: a cell extract (the source cell has no endogenous coding sequence/coding gene for integrated RNA polymerase, nor endogenous coding sequence/coding gene for integrated DNA polymerase), exogenously added RNA polymerase, an energy system, a substrate for RNA synthesis, a substrate for protein synthesis, a crowding agent, exogenous magnesium ions, exogenous potassium ions, a buffer, and optionally a dispensing container comprising any of the following components: an exogenous DNA template for coding RNA polymerase, exogenously added DNA polymerase, an exogenous DNA template for coding DNA polymerase, an antioxidant or a reducing agent, trehalose, a reaction promoter and an aqueous solvent. The RNA polymerase is independently more preferably T7 RNA polymerase. The DNA polymerase is independently more preferably phi29 DNA polymerase. The cell extract contains transfer RNA and ribosome. The cell extract is preferably a eukaryotic cell extract, more preferably a kluyveromyces lactis cell extract.

In a third aspect, the invention provides the use of an alkane in a method for the in vitro cell-free synthesis of a foreign protein according to the first aspect, or in a kit for the in vitro synthesis of a protein according to the second aspect, or in the in vitro synthesis of a protein; wherein the alkane is used to build a hydrophobic interface.

Preferably, the use in vitro protein synthesis includes, but is not limited to, use in protein manufacture, or use in protein synthesis-based assays, among others.

The application fields of the in vitro cell-free synthesis method of the exogenous protein include but are not limited to the fields of biomedicine, molecular biology, medicine, in vitro detection, medical diagnosis, regenerative medicine, bioengineering, tissue engineering, stem cell engineering, genetic engineering, polymer engineering, surface engineering, nano engineering, cosmetics, food additives, nutritional agents, agriculture, feed, living goods, washing, environment, chemical dyeing, fluorescent labeling and the like.

The invention will be further elucidated with reference to the specific embodiments and the accompanying figures 1-13. It should be understood that these examples are illustrative only and are not intended to limit the scope of the present invention. Experimental procedures without specific conditions noted in the following examples, generally following conventional conditions, such as "Sambrook et al, molecular cloning: a laboratory Manual (New York: Cold Spring Harbor laboratory Press,1989), "the Manual of cell-free protein Synthesis experiments," Edited by Alexander S.Spirin and James R.Swartz.cell-free protein synthesis: methods and protocols [ M ].2008 ", etc., or according to the conditions suggested by the manufacturer or as directed by, with reference to, the specific embodiments described above. Unless otherwise indicated, percentages and parts referred to in this invention are percentages and parts by weight.

Unless otherwise specified, the materials and reagents used in the examples of the present invention are commercially available products.

Examples 1 to 12 have the same meanings as in examples S1 to S12, respectively, and can be used interchangeably.

Kluyveromyces lactis (abbreviated as K.lactis or kl) was used as a source of cell extract in examples S2-S12. Examples S3-S12 of the present invention all used a modified strain of Kluyveromyces lactis to prepare a cell extract. It is to be understood that the same design and analysis and experimental procedures are also applicable to other cell extract sources described herein, including, but not limited to, prokaryotic cells (e.g., E.coli), such as other yeast cells, such as plant cells, insect cells, animal cells (e.g., mammalian cells, specifically, murine, rabbit, monkey, human, etc.), and other eukaryotic cells.

The plasmid expression vectors used in the examples of the present invention are only for specifically illustrating the embodiments of the present invention and do not limit the scope of the present invention; other plasmid vectors useful in the practice of the present invention include, but are not limited to, common plasmid vectors commercially available at the present time, such as, for example: pET series plasmids, pGEM series plasmids, and the like.

The alkanes used in the following examples refer to linear chain structures (n-structures, linear structures), unless otherwise specified. For example, decane, which is not particularly limited, means n-decane. The physical parameters of the various types of alkanes used in the following examples are shown in table 2 below.

TABLE 2 description of the parameters of the hydrocarbon materials used in examples S3-S12

Wherein, the reaction vessel adopts 24-hole plates or 48-hole plates which are flat-bottom cell culture plates. Wherein the bottom area of the 24-hole plate is 1.77cm²The bottom area of the 48-hole plate is 0.8cm²。

3

In the following examples, negative control groups (NC groups) were provided, and neither alkane nor DNA template encoding a fluorescent protein was added, and other reaction conditions were the same as those in the experimental groups in the examples. After 3h and 18-22 h of reaction, the RFU value is negligible relative to a blank control group (BC group), the RFU value does not exceed 35, and the experimental result data of part of NC groups are not shown in a graph.

Example S1 preparation of a nucleic acid template encoding the foreign protein mEGFP

And constructing a plasmid vector for expressing the mEGFP, and performing in-vitro DNA amplification to prepare a plasmid for encoding the exogenous protein mEGFP.

Selecting enhanced green fluorescent protein (mEGFP) as a foreign protein to serve as a target expression product, wherein the amino acid sequence of the foreign protein is shown as SEQ ID No. 2.

And selecting a plasmid vector. The artificial plasmid vector designed aiming at the kluyveromyces lactis cell extract is adopted, and the artificial plasmid vector contains functional elements such as a T7 promoter, a T7 terminator, a 5 'UTR and a 3' UTR. The plasmid vector can be combined with a Kluyveromyces lactis cell extract containing endogenously expressed T7 RNA polymerase to construct an in vitro cell-free protein synthesis system, and various exogenous proteins are expressed in vitro.

The DNA fragment containing the mEGFP coding gene is inserted into a plasmid vector by adopting a PCR amplification and homologous fragment recombination method to construct a plasmid vector for expressing the mEGFP, which is marked as a plasmid D2P-mEGFP (abbreviated as pD2P-mEGFP) of 6384 bp. The plasmid was confirmed to be correct by gene sequencing. Wherein, the gene sequence of the code mEGFP is shown as SEQ ID No. 1.

The map of the pD2P-mEGFP plasmid is shown in FIG. 1, and the structural element composition is shown in Table 3 below.

TABLE 3 structural element description of plasmid encoding foreign protein mEGFP (pD2P-mEGFP)

DNA amplification was performed. The amplification reaction system comprises the following components in final concentration: 1. mu.M-5. mu.M random primer (primer sequence: NNNNN), 1.14 ng/. mu.L of the above plasmid (pD2P-mEGFP, as template), 0.5 mM-1 mM deoxynucleoside triphosphate mixture (dNTP), 0.1 mg/mL-0.5 mg/mLBSA, 0.05 mg/mL-0.1 mg/mL phi29 DNA polymerase, 1 XPhi 29 reaction buffer (ingredients 200mM Tris-HCl,20mM MgCl)₂,10mM(NH₄)₂SO₄10mM KCl, pH 7.5). And mixing the reaction system uniformly, and placing the mixture in an environment at 30 ℃ for reaction for 2 hours. Obtaining a DNA template, measuring the nucleic acid concentration by an ultraviolet spectrophotometer, and storing the reaction liquid for later use as the nucleic acid template in the subsequent embodiment.

Example S2 preparation of cell extract

Examples S3-S12 of the present invention all used a modified strain of Kluyveromyces lactis to prepare a cell extract.

The cell extract is derived from Kluyveromyces lactis cell extract (Kluyveromyces lactis, K.lactis). The encoding gene of T7 RNA polymerase is integrated into the genome of Kluyveromyces lactis by adopting a modified strain based on Kluyveromyces lactis strain ATCC8585 and a method recorded in CN109423496A to obtain the modified strain, so that the modified strain can endogenously express T7 RNA polymerase. According to the comparison of the control experiment, the Kluyveromyces lactis without endogenously integrating the coding gene of the T7 RNA polymerase can hardly perform the in vitro protein synthesis reaction without adding any exogenous RNA polymerase; after the endogenous integration and transformation, the high-efficiency expression of the exogenous protein can be realized under the condition of not adding any exogenous RNA polymerase; can reach the protein synthesis level of the traditional in vitro protein synthesis system (in the traditional in vitro protein synthesis system, a cell extract is prepared by adopting a strain which is not subjected to endogenous modification of T7 RNA polymerase, and exogenous T7 RNA polymerase is added into the synthesis system). The hydrophobic interface optimization method of the embodiments S3-S12 of the present invention is also applicable to in vitro protein synthesis systems of strains (including but not limited to Kluyveromyces lactis strains) that are not endogenously modified with T7 RNA polymerase, and can achieve the same or similar optimization effects.

The preparation process of the kluyveromyces lactis cell extract adopts conventional technical means, and refers to the method recorded in CN 109593656A. The preparation steps, in summary, include: providing a Kluyveromyces lactis cell raw material which is subjected to fermentation culture, quickly freezing the cells by using liquid nitrogen, crushing the cells, centrifuging and collecting supernatant to obtain a cell extract.

The protein concentration of the obtained kluyveromyces lactis cell extract is 20-40 mg/mL.

Examples S2-S12 of the present invention used the following Kluyveromyces lactis cell extract (lysate).

TABLE 4 Kluyveromyces lactis (K.lactis) cell extract information used in examples S2-S12

Example S3 Effect of cyclohexane (liquid) on the protein Synthesis Capacity of in vitro protein Synthesis System

3.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

Each system volume was 300. mu.L, the reaction was carried out in a flat bottom 48-well plate with a bottom area of 0.8cm per well².3 replicates were set up for each sample and the mean and standard deviation (error bar) were calculated.

In vitro cell-free protein synthesis system: the final concentration of each component is as follows: 9.78mM Tris-HCl, pH8.0, 80mM potassium acetate, 5.0mM magnesium acetate, 1.5mM nucleoside triphosphate mixture (adenosine triphosphate, guanosine triphosphate, cytosine triphosphate and uridine triphosphate, each at a concentration of 1.5mM), 0.7mM amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine, each at a concentration of 0.7mM), 0.44mM Dithiothreitol (DTT), 2% (w/v) polyethylene glycol 8000, 15mM glucose, 52.48mg/mL maltodextrin, 24mM tripotassium phosphate, a 50% by volume kluyveromyces lactis cell extract. Mixing to form an aqueous phase system.

3.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration curve of cyclohexane): adding cyclohexane in 0.1-20% (v/v); wherein the cyclohexane is in liquid state. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): no alkane was added (cyclohexane addition amount: 0) to the above experimental group.

Negative control group (NC group): in contrast to the experimental groups described above, no alkane was added, and no DNA template was added subsequently.

3.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by the in vitro RCA amplification of the above example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed in an environment of 20-30 ℃ and subjected to shaking table reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

3.4 fluorescent protein Activity assay: the sample to be detected is placed in an Envision 2120 multifunctional microplate reader (Perkinelmer), the intensity of a Fluorescence signal is detected, and a Relative Fluorescence Unit (RFU) is taken as an activity Unit. The size of the RFU value can reflect the synthesis amount of the mEGFP protein, and the conversion relation between the mass volume concentration X (unit mu g/mL) of the mEGFP and the RFU value is as follows:within the scope of the present invention, there is a substantially linear relationship between X and RFU.

The fluorescence test was performed on each reaction system sample. Sample treatment: centrifuge at 4000rpm at 25 deg.C (room temperature) for 1 minute. The sample to be detected is placed in an Envision 2120 multifunctional microplate reader, the adopted detection wavelength is excitation wavelength/emission wavelength (Ex/Em):488nm/507nm, and the relative fluorescence unit value (RFU) is obtained through detection.

3.5 Experimental results: as shown in fig. 4. After reacting for 18h, when the addition amount of cyclohexane is 0.1% (v/v) to 5% (v/v), the RFU values of the experimental group are all higher than that of a blank control group (BC group), and the protein synthesis capacity of the in vitro protein synthesis system is improved. Particularly, when the addition amount of cyclohexane was 1.8% (v/v), the RFU value of the experimental group was increased by 25.64% relative to that of the BC group, and the synthesis amount of the foreign protein mmefp was increased by 25.64%.

Example S4 Effect of isooctane (liquid) on protein Synthesis Capacity of in vitro protein Synthesis System

4.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

4.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration curve of isooctane): adding 0.5% (v/v) to 5% (v/v) isooctane into the system respectively; wherein isooctane is in liquid state. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): the alkane was not added to the experimental group (the amount of added isooctane was 0).

Negative control group (NC group): in contrast to the experimental groups described above, no alkane was added, and no DNA template was added subsequently.

4.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by the in vitro RCA amplification of the above example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed in an environment of 20-30 ℃ and subjected to shaking table reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

4.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

4.5 Experimental results: as shown in fig. 5. After reacting for 18h, when the addition amount of isooctane is 0.5% (v/v) -5% (v/v), the RFU values of the experimental group are all higher than that of a blank control group (BC group), and the protein synthesis capacity of the in vitro protein synthesis system is improved. Particularly, when the addition amount of isooctane was 0.5% (v/v), 0.8% (v/v), 1% (v/v), 1.2% (v/v), 1.4% (v/v), 4% (v/v), 5% (v/v), the RFU values of the experimental groups were increased by 89.16%, 88.58%, 75.29%, 77.15%, 70.04%, 73.66%, 79.49%, respectively, relative to the BC group, and the synthesis amount of foreign protein mmefp was significantly increased.

Example S5 Effect of decane (liquid) on the protein Synthesis Capacity of in vitro protein Synthesis System

5.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

5.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration curve of n-decane): adding 0.1% (v/v) to 5% (v/v) decane (n-decane) to the system; wherein decane is liquid. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): no alkane was added (decane added 0) to the above experimental group.

Negative control group (NC group): in contrast to the experimental groups described above, no alkane was added, and no DNA template was added subsequently.

5.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by the in vitro RCA amplification of the above example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed in an environment of 20-30 ℃ and subjected to shaking table reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

5.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

5.5 Experimental results: as shown in fig. 6. After the reaction is carried out for 18h, when the addition amount of decane is 0.1% (v/v) -1.4% (v/v), 2% (v/v) and 5% (v/v), the RFU values of the experimental group are all higher than those of a blank control group (BC group), and the protein synthesis capacity of the in vitro protein synthesis system is improved. Particularly, when the addition amount of decane was 1.2% (v/v), 1.4% (v/v) and 5% (v/v), the RFU values of the experimental group were respectively increased by 28.66%, 23.93% and 22.18% with respect to the BC group, and the synthesis amount of foreign protein mmefp was remarkably increased.

Example S6 Effect of tetradecane (liquid) on protein Synthesis Capacity of in vitro protein Synthesis System

6.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

6.2 reaction interface (providing a hydrophobic interface)

Experimental group (tetradecane concentration profile): adding 0.1% (v/v) -2% (v/v) tetradecane into the system respectively; wherein tetradecane is in liquid state. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): no alkane was added (tetradecane addition amount: 0) to the above experimental group.

Negative control group (NC group): in contrast to the experimental groups described above, no alkane was added, and no DNA template was added subsequently.

6.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed at 20-30 ℃ and subjected to shaking reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

6.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

6.5 Experimental results: as shown in fig. 7. After 3h and 18h of reaction, when the amount of tetradecane added was 0.1% (v/v) to 2% (v/v), the RFU values of the experimental group were all higher than that of the blank control group (BC group). The protein synthesis amount of the in vitro protein synthesis system is increased by 10.24-26.61% in 3h, and the protein synthesis amount of the in vitro protein synthesis system is increased by 11.73-47.09% in 18h, which is detailed in the following table 5. The reaction efficiency and the protein synthesis amount are improved.

TABLE 5 Experimental results for optimizing in vitro protein Synthesis System Using tetradecane to provide a hydrophobic interface (see FIG. 7)

Example S7 Effect of tetradecane (liquid) on protein Synthesis Capacity of in vitro protein Synthesis System

7.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

7.2 reaction interface (providing a hydrophobic interface)

Experimental group (tetradecane concentration profile): adding 2% (v/v) to 20% (v/v) tetradecane into the system respectively; wherein tetradecane is in liquid state. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): no alkane was added (tetradecane addition amount: 0) to the above experimental group.

Negative control group (NC group): in contrast to the experimental groups described above, no alkane was added, and no DNA template was added subsequently.

7.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed at 20-30 ℃ and subjected to shaking reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

7.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

7.5 Experimental results: as shown in fig. 8. After reacting for 3h, when the addition amount of tetradecane is 2% (v/v) -20% (v/v), the RFU values of the experimental group are all higher than that of the blank control group (BC group) by 1.65% -34.12%, and the reaction efficiency is improved. After reacting for 18h, when the addition amount of tetradecane is 2% (v/v) and 5% (v/v), the RFU values of the experimental group are higher than those of a blank control group (BC group), the protein synthesis amounts of the in vitro protein synthesis system are respectively increased by 21.10% and 11.77%, and the protein synthesis amounts are increased.

Example S8 Effect of pentadecylcyclohexane (liquid) on protein Synthesis Capacity of in vitro protein Synthesis System

8.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

8.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration profile of pentadecylcyclohexane): adding 0.1% (v/v) to 20% (v/v) pentadecylcyclohexane into the system respectively; wherein the pentadecylcyclohexane is liquid. Upon mixing, an oil phase layer forms above the aqueous phase system, and a hydrophobic interface is provided by the reactive interface between the oil phase layer and the aqueous phase.

Blank control group (BC group): no alkane was added (pentadecylcyclohexane addition amount: 0) to the above experimental group.

Negative control group (NC group): no alkane was added (pentadecylcyclohexane was added in an amount of 0) to the above experimental group, and no DNA template encoding a foreign protein was added subsequently.

8.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed at 20-30 ℃ and subjected to shaking reaction overnight. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

8.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

8.5 Experimental results: as shown in fig. 9. After reacting for 3h, when the addition amount of 0.1% (v/v) -15% (v/v) pentadecylcyclohexane is added, the RFU values of the experimental group are all higher than those of a blank control group (BC group) by 0.03% -14.97%, and the protein synthesis efficiency is improved. After reacting for 18h, when the addition amount of the pentadecylcyclohexane is 12% (v/v) to 20% (v/v), the RFU values of the experimental group are all higher than those of a blank control group (BC group), and the protein synthesis amount of the in vitro protein synthesis system is improved by 20.35-36.60%. When the addition amounts of the pentadecylcyclohexane are respectively 12% (v/v), 15% (v/v), 18% (v/v) and 20% (v/v), the RFU values of the experimental group are respectively improved by 20.35%, 29.50%, 36.60% and 23.00% relative to the BC group, and the synthesis amount of the foreign protein mEGFP is remarkably improved.

Example S9 Effect of tetratetradecane (solid powder) on protein Synthesis Capacity of in vitro protein Synthesis System

9.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

The same aqueous in vitro cell-free protein synthesis system as 3.1 in example 3 was used. Wherein each system volume was 300. mu.L, and the reaction was carried out in a flat bottom 48-well plate.

9.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration curve of tetratetradecane): adding 0-500 mu g/mu L of tetratetradecane into the system respectively; wherein the tetratetradecane is in a solid state. Adding tetratetradecane into the reaction system, mixing to form a suspension, and dissolving completely to form an oil phase layer floating above the reaction solution.

Blank control group (BC group): alkane was not added to the experimental group (tetratetradecane addition amount: 0).

Negative control group (NC group): no alkane was added (0 was added to tetratetradecane) to the above experimental groups, and no DNA template encoding a foreign protein was added subsequently.

9.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed at 20-30 ℃ and subjected to shaking reaction overnight. During the reaction, tetratetradecane was present in the upper oily layer. Samples were taken at 3h and 18h respectively for fluorescent protein activity assay.

9.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

9.5 Experimental results: as shown in fig. 10. After reacting for 18h, the addition amount of the tetratetradecane is 0-500 mu g/mu L, the RFU value of an experimental group is higher than that of a blank control group (BC group), and the protein synthesis amount of an in-vitro protein synthesis system is improved by 20.35-36.60%. When the addition amount of tetratetradecane is 0.02% (v/v), 0.035% (v/v), 0.04% (v/v) and 0.05% (v/v), the RFU values of the experimental group are respectively improved by 26.47%, 30.90%, 27.97% and 26.86% relative to the BC group, and the synthesis amount of the foreign protein mEGFP is obviously improved.

Example S10 Effect of Vaseline (paste) on protein Synthesis Capacity of in vitro protein Synthesis System

10.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

Each system volume was 300. mu.L, the reaction was carried out in a flat bottom 48-well plate with a bottom area of 0.8cm per well².3 replicates were set up for each sample and the mean and standard deviation (error bar) were calculated.

In vitro cell-free protein synthesis system: the final concentration of each component is as follows: 9.78mM Tris-HCl (pH8.0), 80mM potassium acetate, 5.0mM magnesium acetate, 1.5mM nucleoside triphosphate mixture (adenosine triphosphate, guanosine triphosphate, cytosine nucleoside triphosphate and uracil nucleoside triphosphate, each at a concentration of 1.5mM), 0.7mM amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine, each at a concentration of 0.7mM), 0.44mM Dithiothreitol (DTT), 2% (w/v) polyethylene glycol 8000, 15mM glucose, 52.48mg/mL maltodextrin, 24mM tripotassium phosphate, 50% by volume Kluyveromyces lactis cell extract. Wherein the prepared cell extract number is ZS12181, and the protein concentration is 25.16 mg/mL.

10.2 reaction interface (providing a hydrophobic interface)

Experimental group (concentration curve of petrolatum): adding 5-450 mu g/mu L vaseline (the weight of solid alkane added in each 200 mu L reaction system is 1-90 mg) into the system; wherein the vaseline is pasty alkane. Is coated on the inner wall and the side wall of the bottom of the hole, and the addition amount is measured by the weight difference before and after coating. A hydrophobic interface is provided by the interface between the petrolatum layer and the aqueous phase.

Blank control group (BC group): no alkane was added (petrolatum spread 0) to the above experimental groups.

Negative control group (NC group): in comparison with the experimental group, no alkane was added (applied amount of vaseline was 0), and no DNA template encoding a foreign protein was added subsequently.

10.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the experimental group and BC group, and after mixing, all the systems were placed at 20-30 ℃ and subjected to shaking reaction overnight. Samples were taken at 18h for fluorescent protein activity testing.

10.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

10.5 results of the experiment: as shown in fig. 11. After reacting for 18h, when the addition amount of the vaseline is 1 mg-3.5 mg/hole), the RFU values of the experimental group are all higher than those of a blank control group (BC group), and the protein synthesis amount of an in vitro protein synthesis system is improved by 9.96-39.95%. When the addition amount of the vaseline in each hole is 1mg, 1.5mg, 2.5mg and 3.5mg respectively, the RFU value of the experimental group is respectively increased by 39.95%, 21.42%, 21.91% and 18.99% compared with the BC group, and the synthesis amount of the foreign protein mEGFP is obviously increased.

Example S11 Combined optimization of Vaseline and activated carbon for in vitro protein Synthesis System

11.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

Each system volume was 300. mu.L, the reaction was carried out in a flat bottom 48-well plate with a bottom area of 0.8cm per well².3 replicates were set up for each sample and the mean and standard deviation (error bar) were calculated.

In vitro cell-free protein synthesis system: the final concentration of each component is as follows: 9.78mM Tris (hydroxymethyl) aminomethane (Tris, pH8.0, pH adjusted with hydrochloric acid solution), 80mM potassium acetate, 5.0mM magnesium acetate, 1.5mM nucleoside triphosphate mixture (adenosine triphosphate, guanosine triphosphate, cytosine nucleoside triphosphate and uracil nucleoside triphosphate, each at a concentration of 1.5mM), 0.7mM amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine, each at a final concentration of 0.7mM), 0.44mM dithiothreitol, 2% (w/v) polyethylene glycol 8000, 15mM glucose, 52.48mg/mL maltodextrin, 24mM tripotassium phosphate, a 50% by volume kluyveromyces lactis cell extract. Wherein the preparation cell extract number is ZS01092, and the protein concentration is 23 mg/mL.

11.2 reaction interface (providing a hydrophobic interface)

BC group (blank control group): no alkane (vaseline coating amount is 0) or active carbon is added.

Vas group (petrolatum group): the side wall and the bottom inner wall of the reactor were coated with 0.005g/mL of vaseline (1 mg per well). A hydrophobic interface is provided by the interface between the petrolatum layer and the aqueous phase.

AC group (activated carbon group): 0.04g/mL of activated carbon particles (12 mg per well) was added to the system and deposited on the bottom inner wall.

AC + Vas group (activated carbon + petrolatum combination optimization group): 0.005g/mL petrolatum (1 mg per well) and 0.04g/mL activated carbon particles (12 mg per well) were added to the system.

NC group (negative control group): no alkane is added (the coating amount of the vaseline is 0), no active carbon is added, and no DNA template for encoding the foreign protein is added subsequently.

11.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the BC group, the Vas group, the AC group, and the AC + Vas group, and after mixing, all the systems were placed at 20 ℃ to 30 ℃ and subjected to shake reaction overnight. Samples were taken at 3h, 6h, 21h for fluorescent protein activity assay.

11.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

11.5 Experimental results: as shown in fig. 12. After the reaction is carried out for 21 hours, the RFU value of a Vas group coated with vaseline in the reactor is improved by 40.38 percent compared with a BC group not coated with vaseline; compared with the AC group without vaseline coating, the RFU value of the AC + Vas group coated with vaseline on the reactor is improved by 57.06%, and compared with the BC group, the RFU value of the reactor is improved by 72.64%; the RFU value is improved by 171.13% compared with that of a blank control group (BC group) by the combination optimization of vaseline and activated carbon, and a synergistic optimization effect is achieved. In addition, compared with the blank control group (BC group), the Vas group, the AC group and the AC + Vas group are respectively improved by 61.79%, 56.61% and 103.98% at 3h, and the Vas group, the AC group and the AC + Vas group are respectively improved by 48.28%, 81.91% and 144.56% at 6h

Example S12 Combined optimization of Vaseline for in vitro protein Synthesis System

12.1 in vitro cell-free protein Synthesis System (without addition of exogenous RNA polymerase)

Each system volume was 300. mu.L, the reaction was carried out in a flat bottom 48-well plate with a bottom area of 0.8cm per well².3 replicates were set up for each sample and the mean and standard deviation (error bar) were calculated.

In vitro cell-free protein synthesis system: the final concentration of each component is as follows: 9.78mM Tris-HCl (pH8.0), 80mM potassium acetate, 5.0mM magnesium acetate, 1.5mM nucleoside triphosphate mixture (adenine nucleoside triphosphate, guanine nucleoside triphosphate, cytosine nucleoside triphosphate and uracil nucleoside triphosphate, each at a concentration of 1.5mM), 0.7mM amino acid mixture (glycine, alanine, valine, leucine, isoleucine, phenylalanine, proline, tryptophan, serine, tyrosine, cysteine, methionine, asparagine, glutamine, threonine, aspartic acid, glutamic acid, lysine, arginine and histidine, each at a concentration of 0.7mM, 0.44mM DTT, 2% (w/v) polyethylene glycol 8000, 15mM glucose, 52.48mg/mL maltodextrin, 24mM tripotassium phosphate, 0.3mg/mL ampicillin (Amp), 16.6. mu.g/mL redDNA (ssDNA), a 50% by volume kluyveromyces lactis cell extract. Wherein the prepared cell extract number is ZS12181, and the protein concentration is 25.16 mg/mL.

12.2 reaction interface (providing a hydrophobic interface)

AC + ssDNA + Amp group (BC group, blank control group): the coating amount of vaseline is 0, and 12mg of active carbon is added into each hole.

Vas + AC + ssDNA + Amp group (petrolatum group): the sidewall and bottom wall of the reactor were coated with 0.05g/mL of petrolatum (1 mg per well) and 12mg of activated carbon was added per well. A hydrophobic interface is provided by the interface between the petrolatum layer and the aqueous phase.

NC group (negative control group): no alkane is added (the coating amount of the vaseline is 0), no active carbon is added, and no DNA template for encoding the foreign protein is added subsequently.

12.3 in vitro protein Synthesis reactions: the NC group is not added with an exogenous DNA template; 15 ng/. mu.L of mEGFP-encoding DNA template (obtained by in vitro RCA amplification of example S1) was added to each of the independent in vitro cell-free protein synthesis systems of the BC group and the vaseline group, and after mixing, all the systems were placed at 20 ℃ to 30 ℃ and subjected to shaking reaction overnight. Samples were taken at 3h, 6h, 21h for fluorescent protein activity assay.

12.4 fluorescent protein Activity assay: the RFU value of the exogenous fluorescent protein, mmefp, synthesized in the sample was determined using the method of 3.4 in example 3.

12.5 results of the experiment: as shown in fig. 13. After 3h, 6h and 21h of reaction, the Vas + AC + ssDNA + Amp groups (Vaseline groups) coated with Vaseline in the reactor are improved by 9.06%, 6.14% and 20.27% in RFU value compared with the BC group not coated with Vaseline respectively.

The above is only a part of the preferred embodiments of the present invention, and the present invention is not limited to the contents of the above embodiments. It will be apparent to those skilled in the art that various changes and modifications can be made which will achieve the same technical effects within the spirit or scope of the invention and the scope of the invention is to be determined by the appended claims.

Sequence listing

<110> Kangma (Shanghai) Biotech Co., Ltd

<120> in-vitro cell-free protein synthesis method based on hydrophobic interface, D2P kit and related application

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Met Val Ser Lys Gly Glu Glu Leu Phe Thr Gly Val Val Pro Ile Leu

1 5 10 15

Val Glu Leu Asp Gly Asp Val Asn Gly His Lys Phe Ser Val Arg Gly

20 25 30

Glu Gly Glu Gly Asp Ala Thr Asn Gly Lys Leu Thr Leu Lys Phe Ile

35 40 45

Cys Thr Thr Gly Lys Leu Pro Val Pro Trp Pro Thr Leu Val Thr Thr

50 55 60

Leu Thr Tyr Gly Val Gln Cys Phe Ser Arg Tyr Pro Asp His Met Lys

65 70 75 80

Gln His Asp Phe Phe Lys Ser Ala Met Pro Glu Gly Tyr Val Gln Glu

85 90 95

Arg Thr Ile Ser Phe Lys Asp Asp Gly Thr Tyr Lys Thr Arg Ala Glu

100 105 110

Val Lys Phe Glu Gly Asp Thr Leu Val Asn Arg Ile Glu Leu Lys Gly

115 120 125

Ile Asp Phe Lys Glu Asp Gly Asn Ile Leu Gly His Lys Leu Glu Tyr

130 135 140

Asn Phe Asn Ser His Asn Val Tyr Ile Thr Ala Asp Lys Gln Lys Asn

145 150 155 160

Gly Ile Lys Ala Asn Phe Lys Ile Arg His Asn Val Glu Asp Gly Ser

165 170 175

Val Gln Leu Ala Asp His Tyr Gln Gln Asn Thr Pro Ile Gly Asp Gly

180 185 190

Pro Val Leu Leu Pro Asp Asn His Tyr Leu Ser Thr Gln Ser Lys Leu

195 200 205

Ser Lys Asp Pro Asn Glu Lys Arg Asp His Met Val Leu Leu Glu Phe

210 215 220

Val Thr Ala Ala Gly Ile Thr Leu Gly Met Asp Glu Leu Tyr Lys

225 230 235